Strain Fitness in Dechlorosoma suillum PS around Dsui_0485

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0484 and Dsui_0485 are separated by 74 nucleotidesDsui_0485 and Dsui_0486 overlap by 4 nucleotidesDsui_0486 and Dsui_0487 are separated by 156 nucleotides Dsui_0484: Dsui_0484 - Holliday junction DNA helicase, RuvB subunit, at 487,587 to 488,669 _0484 Dsui_0485: Dsui_0485 - Holliday junction DNA helicase, RuvA subunit, at 488,744 to 489,328 _0485 Dsui_0486: Dsui_0486 - crossover junction endodeoxyribonuclease RuvC, at 489,325 to 489,930 _0486 Dsui_0487: Dsui_0487 - hemerythrin HHE cation binding domain-containing protein, at 490,087 to 490,620 _0487 Position (kb) 488 489 490Strain fitness (log2 ratio) -2 -1 0 1at 489.354 kb on - strandat 489.946 kb on - strandat 490.008 kb on - strandat 490.055 kb on + strandat 490.059 kb on + strandat 490.060 kb on + strandat 490.068 kb on - strandat 490.140 kb on + strandat 490.141 kb on - strand, within Dsui_0487at 490.214 kb on - strand, within Dsui_0487at 490.306 kb on - strand, within Dsui_0487

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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489,354 - -0.7
489,946 - +0.5
490,008 - -1.1
490,055 + -1.5
490,059 + -1.8
490,060 + -1.8
490,068 - +0.5
490,140 + -0.5
490,141 - Dsui_0487 0.10 -1.1
490,214 - Dsui_0487 0.24 -1.1
490,306 - Dsui_0487 0.41 -1.3

Or see this region's nucleotide sequence