Strain Fitness in Dechlorosoma suillum PS around Dsui_0123

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0121 and Dsui_0122 are separated by 100 nucleotidesDsui_0122 and Dsui_0123 are separated by 3 nucleotidesDsui_0123 and Dsui_0124 are separated by 9 nucleotidesDsui_0124 and Dsui_0125 are separated by 4 nucleotides Dsui_0121: Dsui_0121 - glutamyl-tRNA reductase, at 119,122 to 120,393 _0121 Dsui_0122: Dsui_0122 - D-tyrosyl-tRNA(Tyr) deacylase, at 120,494 to 120,964 _0122 Dsui_0123: Dsui_0123 - hypothetical protein, at 120,968 to 121,624 _0123 Dsui_0124: Dsui_0124 - lactate dehydrogenase-like oxidoreductase, at 121,634 to 122,602 _0124 Dsui_0125: Dsui_0125 - NAD-dependent aldehyde dehydrogenase, at 122,607 to 123,344 _0125 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 120.429 kb on - strandat 120.447 kb on - strandat 120.517 kb on + strandat 120.714 kb on - strand, within Dsui_0122at 120.745 kb on + strandat 120.753 kb on - strand, within Dsui_0122at 120.889 kb on - strand, within Dsui_0122at 120.907 kb on + strandat 120.974 kb on - strandat 120.974 kb on - strandat 121.029 kb on - strandat 121.036 kb on - strand, within Dsui_0123at 121.052 kb on + strand, within Dsui_0123at 121.138 kb on - strand, within Dsui_0123at 121.149 kb on - strand, within Dsui_0123at 121.219 kb on + strand, within Dsui_0123at 121.219 kb on + strandat 121.219 kb on + strandat 121.250 kb on + strand, within Dsui_0123at 121.265 kb on + strandat 121.399 kb on - strand, within Dsui_0123at 121.445 kb on - strand, within Dsui_0123at 121.518 kb on - strand, within Dsui_0123at 121.683 kb on + strandat 121.683 kb on + strandat 121.691 kb on - strandat 121.710 kb on + strandat 121.736 kb on + strandat 121.737 kb on + strandat 121.783 kb on + strand, within Dsui_0124at 121.783 kb on + strandat 121.791 kb on - strand, within Dsui_0124at 121.842 kb on - strand, within Dsui_0124at 121.935 kb on - strand, within Dsui_0124at 121.935 kb on - strand, within Dsui_0124at 121.997 kb on + strand, within Dsui_0124at 122.005 kb on - strand, within Dsui_0124at 122.043 kb on + strandat 122.043 kb on - strand, within Dsui_0124at 122.065 kb on - strand, within Dsui_0124at 122.105 kb on + strand, within Dsui_0124at 122.126 kb on + strandat 122.139 kb on - strand, within Dsui_0124at 122.155 kb on + strand, within Dsui_0124at 122.155 kb on + strandat 122.156 kb on + strandat 122.217 kb on - strand, within Dsui_0124at 122.252 kb on + strand, within Dsui_0124at 122.281 kb on - strand, within Dsui_0124at 122.314 kb on - strand, within Dsui_0124at 122.315 kb on - strand, within Dsui_0124at 122.341 kb on - strand, within Dsui_0124at 122.359 kb on - strand, within Dsui_0124at 122.361 kb on + strand, within Dsui_0124at 122.449 kb on - strand, within Dsui_0124at 122.519 kb on - strandat 122.526 kb on + strandat 122.534 kb on - strandat 122.605 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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120,429 - -0.2
120,447 - +0.2
120,517 + +1.0
120,714 - Dsui_0122 0.47 -0.4
120,745 + -0.0
120,753 - Dsui_0122 0.55 -0.2
120,889 - Dsui_0122 0.84 -0.0
120,907 + -0.0
120,974 - -0.8
120,974 - +0.9
121,029 - -0.1
121,036 - Dsui_0123 0.10 +0.0
121,052 + Dsui_0123 0.13 +1.0
121,138 - Dsui_0123 0.26 +0.2
121,149 - Dsui_0123 0.28 +0.6
121,219 + Dsui_0123 0.38 -1.8
121,219 + -1.0
121,219 + +1.0
121,250 + Dsui_0123 0.43 +1.0
121,265 + -0.0
121,399 - Dsui_0123 0.66 +0.0
121,445 - Dsui_0123 0.73 +0.6
121,518 - Dsui_0123 0.84 -0.1
121,683 + +1.0
121,683 + +1.0
121,691 - -0.2
121,710 + +1.0
121,736 + -0.0
121,737 + +1.0
121,783 + Dsui_0124 0.15 -1.6
121,783 + +1.0
121,791 - Dsui_0124 0.16 -0.3
121,842 - Dsui_0124 0.21 +0.3
121,935 - Dsui_0124 0.31 -0.3
121,935 - Dsui_0124 0.31 +1.2
121,997 + Dsui_0124 0.37 -1.4
122,005 - Dsui_0124 0.38 +0.1
122,043 + +1.0
122,043 - Dsui_0124 0.42 +1.0
122,065 - Dsui_0124 0.44 -0.3
122,105 + Dsui_0124 0.49 -1.0
122,126 + +1.0
122,139 - Dsui_0124 0.52 +0.1
122,155 + Dsui_0124 0.54 +1.0
122,155 + -0.0
122,156 + +1.0
122,217 - Dsui_0124 0.60 -0.1
122,252 + Dsui_0124 0.64 -1.0
122,281 - Dsui_0124 0.67 -0.2
122,314 - Dsui_0124 0.70 -0.5
122,315 - Dsui_0124 0.70 +0.2
122,341 - Dsui_0124 0.73 -0.0
122,359 - Dsui_0124 0.75 +0.1
122,361 + Dsui_0124 0.75 -0.0
122,449 - Dsui_0124 0.84 +0.1
122,519 - -0.2
122,526 + +1.0
122,534 - +2.6
122,605 + +1.0

Or see this region's nucleotide sequence