Strain Fitness in Dechlorosoma suillum PS around Dsui_0079

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0078 and Dsui_0079 are separated by 50 nucleotidesDsui_0079 and Dsui_0080 are separated by 515 nucleotides Dsui_0078: Dsui_0078 - putative dehydrogenase, at 74,640 to 75,620 _0078 Dsui_0079: Dsui_0079 - pseudaminic acid synthase, at 75,671 to 76,726 _0079 Dsui_0080: Dsui_0080 - pseudaminic acid biosynthesis-associated protein PseG, at 77,242 to 78,381 _0080 Position (kb) 75 76 77Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 74.680 kb on + strandat 74.688 kb on - strandat 74.719 kb on - strandat 74.721 kb on + strandat 74.739 kb on - strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.807 kb on + strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.870 kb on - strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.920 kb on + strand, within Dsui_0078at 74.928 kb on - strand, within Dsui_0078at 74.930 kb on + strand, within Dsui_0078at 74.978 kb on - strand, within Dsui_0078at 75.012 kb on + strand, within Dsui_0078at 75.019 kb on + strand, within Dsui_0078at 75.049 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.118 kb on + strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.232 kb on - strand, within Dsui_0078at 75.251 kb on - strand, within Dsui_0078at 75.309 kb on + strand, within Dsui_0078at 75.360 kb on + strand, within Dsui_0078at 75.401 kb on + strand, within Dsui_0078at 75.464 kb on - strand, within Dsui_0078at 75.538 kb on - strandat 75.557 kb on - strandat 75.573 kb on - strandat 75.599 kb on - strandat 75.630 kb on + strandat 75.635 kb on + strandat 75.646 kb on + strandat 75.646 kb on + strandat 75.673 kb on + strandat 75.687 kb on + strandat 75.692 kb on + strandat 75.731 kb on + strandat 75.743 kb on + strandat 75.749 kb on - strandat 75.760 kb on - strandat 75.853 kb on + strand, within Dsui_0079at 75.907 kb on - strand, within Dsui_0079at 75.907 kb on - strand, within Dsui_0079at 75.927 kb on + strandat 75.935 kb on - strand, within Dsui_0079at 75.935 kb on - strand, within Dsui_0079at 75.935 kb on - strand, within Dsui_0079at 75.994 kb on + strand, within Dsui_0079at 75.999 kb on + strand, within Dsui_0079at 76.051 kb on - strand, within Dsui_0079at 76.064 kb on - strand, within Dsui_0079at 76.083 kb on + strand, within Dsui_0079at 76.129 kb on + strand, within Dsui_0079at 76.138 kb on - strand, within Dsui_0079at 76.155 kb on - strand, within Dsui_0079at 76.386 kb on + strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.511 kb on + strand, within Dsui_0079at 76.544 kb on + strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.554 kb on - strand, within Dsui_0079at 76.581 kb on + strand, within Dsui_0079at 76.589 kb on - strand, within Dsui_0079at 76.597 kb on - strand, within Dsui_0079at 76.608 kb on - strand, within Dsui_0079at 76.644 kb on + strandat 76.670 kb on - strandat 76.684 kb on - strandat 76.727 kb on + strandat 76.735 kb on - strandat 76.735 kb on - strandat 76.735 kb on - strandat 76.739 kb on + strandat 76.744 kb on + strandat 76.750 kb on + strandat 76.755 kb on + strandat 76.758 kb on - strandat 76.763 kb on - strandat 76.763 kb on - strandat 76.763 kb on - strandat 76.777 kb on - strandat 76.902 kb on - strandat 77.267 kb on - strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.332 kb on - strandat 77.334 kb on + strandat 77.417 kb on - strand, within Dsui_0080at 77.506 kb on + strand, within Dsui_0080at 77.523 kb on + strand, within Dsui_0080at 77.549 kb on - strand, within Dsui_0080at 77.555 kb on + strand, within Dsui_0080at 77.563 kb on - strand, within Dsui_0080at 77.563 kb on - strand, within Dsui_0080at 77.572 kb on - strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.588 kb on - strand, within Dsui_0080at 77.611 kb on - strand, within Dsui_0080at 77.693 kb on + strand, within Dsui_0080at 77.701 kb on - strand, within Dsui_0080at 77.708 kb on + strand, within Dsui_0080at 77.716 kb on - strand, within Dsui_0080at 77.719 kb on + strand, within Dsui_0080

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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74,680 + -0.0
74,688 - -0.4
74,719 - -3.1
74,721 + +1.0
74,739 - Dsui_0078 0.10 -3.0
74,799 + Dsui_0078 0.16 -1.8
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 -0.6
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 -0.0
74,807 + Dsui_0078 0.17 +1.0
74,807 - Dsui_0078 0.17 -4.2
74,807 - Dsui_0078 0.17 -3.0
74,870 - Dsui_0078 0.23 -2.8
74,903 + Dsui_0078 0.27 -0.0
74,903 + Dsui_0078 0.27 +1.0
74,916 - Dsui_0078 0.28 -3.6
74,916 - Dsui_0078 0.28 -3.0
74,920 + Dsui_0078 0.29 -0.0
74,928 - Dsui_0078 0.29 -3.6
74,930 + Dsui_0078 0.30 +1.0
74,978 - Dsui_0078 0.34 -2.7
75,012 + Dsui_0078 0.38 -1.0
75,019 + Dsui_0078 0.39 -1.1
75,049 + Dsui_0078 0.42 -0.0
75,082 + Dsui_0078 0.45 -0.6
75,082 + Dsui_0078 0.45 -1.6
75,082 + Dsui_0078 0.45 -0.6
75,090 - Dsui_0078 0.46 -2.2
75,090 - Dsui_0078 0.46 -2.0
75,090 - Dsui_0078 0.46 -2.3
75,118 + Dsui_0078 0.49 -0.0
75,126 - Dsui_0078 0.50 -1.4
75,126 - Dsui_0078 0.50 -1.5
75,126 - Dsui_0078 0.50 -1.3
75,126 - Dsui_0078 0.50 -2.3
75,164 + Dsui_0078 0.53 +1.0
75,164 + Dsui_0078 0.53 -0.6
75,232 - Dsui_0078 0.60 -0.9
75,251 - Dsui_0078 0.62 -1.6
75,309 + Dsui_0078 0.68 -0.0
75,360 + Dsui_0078 0.73 +1.0
75,401 + Dsui_0078 0.78 +1.0
75,464 - Dsui_0078 0.84 -2.2
75,538 - -1.2
75,557 - -0.8
75,573 - -2.5
75,599 - +0.1
75,630 + +1.0
75,635 + +1.0
75,646 + -0.6
75,646 + -0.6
75,673 + +1.0
75,687 + -0.0
75,692 + -2.9
75,731 + -1.0
75,743 + +1.0
75,749 - -6.2
75,760 - -5.0
75,853 + Dsui_0079 0.17 +1.0
75,907 - Dsui_0079 0.22 -5.9
75,907 - Dsui_0079 0.22 -5.8
75,927 + +1.0
75,935 - Dsui_0079 0.25 -4.9
75,935 - Dsui_0079 0.25 -5.2
75,935 - Dsui_0079 0.25 -5.2
75,994 + Dsui_0079 0.31 +1.0
75,999 + Dsui_0079 0.31 -0.6
76,051 - Dsui_0079 0.36 -5.9
76,064 - Dsui_0079 0.37 -5.4
76,083 + Dsui_0079 0.39 +1.0
76,129 + Dsui_0079 0.43 -1.0
76,138 - Dsui_0079 0.44 -3.7
76,155 - Dsui_0079 0.46 -4.9
76,386 + Dsui_0079 0.68 +1.0
76,427 - Dsui_0079 0.72 -3.3
76,427 - Dsui_0079 0.72 -6.2
76,479 - Dsui_0079 0.77 -5.3
76,479 - Dsui_0079 0.77 -5.7
76,511 + Dsui_0079 0.80 +1.0
76,544 + Dsui_0079 0.83 +1.0
76,545 - Dsui_0079 0.83 -5.8
76,545 - Dsui_0079 0.83 -5.2
76,554 - Dsui_0079 0.84 -6.2
76,581 + Dsui_0079 0.86 -0.0
76,589 - Dsui_0079 0.87 -7.3
76,597 - Dsui_0079 0.88 -3.7
76,608 - Dsui_0079 0.89 -5.0
76,644 + +1.0
76,670 - -4.5
76,684 - -5.8
76,727 + +2.0
76,735 - +0.2
76,735 - +0.1
76,735 - +0.3
76,739 + -0.0
76,744 + -1.4
76,750 + -1.4
76,755 + +1.0
76,758 - +0.2
76,763 - -4.3
76,763 - -4.5
76,763 - -3.9
76,777 - -0.6
76,902 - -0.6
77,267 - -0.0
77,324 + -0.0
77,324 + -0.0
77,324 + -0.0
77,324 + +1.0
77,332 - -4.8
77,334 + -0.0
77,417 - Dsui_0080 0.15 -3.6
77,506 + Dsui_0080 0.23 +1.0
77,523 + Dsui_0080 0.25 +1.0
77,549 - Dsui_0080 0.27 -3.6
77,555 + Dsui_0080 0.27 +1.0
77,563 - Dsui_0080 0.28 -3.6
77,563 - Dsui_0080 0.28 -4.4
77,572 - Dsui_0080 0.29 -3.3
77,580 + Dsui_0080 0.30 +1.0
77,580 + Dsui_0080 0.30 +1.0
77,580 + Dsui_0080 0.30 -0.6
77,580 + Dsui_0080 0.30 +1.0
77,588 - Dsui_0080 0.30 -3.9
77,611 - Dsui_0080 0.32 -3.5
77,693 + Dsui_0080 0.40 -0.6
77,701 - Dsui_0080 0.40 -4.3
77,708 + Dsui_0080 0.41 -1.4
77,716 - Dsui_0080 0.42 -4.9
77,719 + Dsui_0080 0.42 -0.0

Or see this region's nucleotide sequence