Strain Fitness in Dechlorosoma suillum PS around Dsui_0077

Experiment: ALP with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0075 and Dsui_0076 overlap by 1 nucleotidesDsui_0076 and Dsui_0077 overlap by 4 nucleotidesDsui_0077 and Dsui_0078 overlap by 4 nucleotides Dsui_0075: Dsui_0075 - hypothetical protein, at 71,910 to 72,812 _0075 Dsui_0076: Dsui_0076 - acetyltransferase, ribosomal protein N-acetylase, at 72,812 to 73,354 _0076 Dsui_0077: Dsui_0077 - putative PLP-dependent enzyme possibly involved in cell wall biogenesis, at 73,351 to 74,643 _0077 Dsui_0078: Dsui_0078 - putative dehydrogenase, at 74,640 to 75,620 _0078 Position (kb) 73 74 75Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 72.371 kb on - strand, within Dsui_0075at 72.376 kb on + strand, within Dsui_0075at 72.376 kb on + strand, within Dsui_0075at 72.441 kb on + strand, within Dsui_0075at 72.442 kb on + strand, within Dsui_0075at 72.442 kb on + strand, within Dsui_0075at 72.467 kb on - strand, within Dsui_0075at 72.473 kb on - strand, within Dsui_0075at 72.476 kb on + strand, within Dsui_0075at 72.496 kb on + strand, within Dsui_0075at 72.498 kb on + strand, within Dsui_0075at 72.498 kb on + strand, within Dsui_0075at 72.504 kb on - strand, within Dsui_0075at 72.508 kb on - strand, within Dsui_0075at 72.565 kb on + strand, within Dsui_0075at 72.573 kb on - strand, within Dsui_0075at 72.612 kb on + strand, within Dsui_0075at 72.643 kb on + strand, within Dsui_0075at 72.648 kb on + strand, within Dsui_0075at 72.648 kb on + strand, within Dsui_0075at 72.651 kb on - strand, within Dsui_0075at 72.656 kb on - strand, within Dsui_0075at 72.656 kb on - strand, within Dsui_0075at 72.690 kb on - strand, within Dsui_0075at 72.728 kb on - strandat 72.738 kb on - strandat 72.765 kb on + strandat 72.773 kb on + strandat 72.840 kb on + strandat 72.840 kb on + strandat 72.840 kb on + strandat 72.840 kb on + strandat 72.843 kb on - strandat 72.848 kb on - strandat 72.848 kb on - strandat 72.848 kb on - strandat 72.865 kb on + strandat 72.865 kb on + strandat 72.865 kb on + strandat 72.873 kb on - strand, within Dsui_0076at 72.895 kb on - strand, within Dsui_0076at 72.897 kb on + strand, within Dsui_0076at 72.918 kb on - strand, within Dsui_0076at 72.918 kb on - strand, within Dsui_0076at 72.934 kb on + strand, within Dsui_0076at 72.937 kb on - strand, within Dsui_0076at 72.991 kb on + strand, within Dsui_0076at 73.038 kb on - strand, within Dsui_0076at 73.053 kb on - strand, within Dsui_0076at 73.076 kb on - strand, within Dsui_0076at 73.081 kb on - strand, within Dsui_0076at 73.131 kb on - strand, within Dsui_0076at 73.131 kb on - strand, within Dsui_0076at 73.164 kb on + strand, within Dsui_0076at 73.164 kb on + strand, within Dsui_0076at 73.172 kb on - strand, within Dsui_0076at 73.185 kb on - strand, within Dsui_0076at 73.190 kb on - strand, within Dsui_0076at 73.194 kb on - strand, within Dsui_0076at 73.285 kb on + strand, within Dsui_0076at 73.287 kb on - strand, within Dsui_0076at 73.293 kb on - strand, within Dsui_0076at 73.293 kb on - strand, within Dsui_0076at 73.295 kb on + strand, within Dsui_0076at 73.303 kb on - strandat 73.313 kb on - strandat 73.370 kb on - strandat 73.373 kb on + strandat 73.376 kb on - strandat 73.381 kb on - strandat 73.381 kb on - strandat 73.381 kb on - strandat 73.381 kb on - strandat 73.425 kb on + strandat 73.435 kb on + strandat 73.501 kb on - strand, within Dsui_0077at 73.509 kb on + strand, within Dsui_0077at 73.532 kb on + strand, within Dsui_0077at 73.532 kb on + strand, within Dsui_0077at 73.545 kb on - strand, within Dsui_0077at 73.593 kb on - strand, within Dsui_0077at 73.618 kb on + strand, within Dsui_0077at 73.639 kb on + strand, within Dsui_0077at 73.642 kb on - strand, within Dsui_0077at 73.674 kb on + strand, within Dsui_0077at 73.681 kb on + strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.689 kb on - strand, within Dsui_0077at 73.697 kb on - strand, within Dsui_0077at 73.710 kb on + strand, within Dsui_0077at 73.731 kb on + strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.739 kb on - strand, within Dsui_0077at 73.798 kb on + strand, within Dsui_0077at 73.812 kb on + strand, within Dsui_0077at 73.812 kb on + strand, within Dsui_0077at 73.830 kb on + strand, within Dsui_0077at 73.840 kb on - strand, within Dsui_0077at 73.844 kb on - strand, within Dsui_0077at 73.878 kb on - strand, within Dsui_0077at 73.901 kb on - strand, within Dsui_0077at 73.915 kb on + strand, within Dsui_0077at 73.944 kb on + strand, within Dsui_0077at 73.990 kb on + strand, within Dsui_0077at 74.000 kb on + strand, within Dsui_0077at 74.006 kb on + strand, within Dsui_0077at 74.008 kb on - strand, within Dsui_0077at 74.008 kb on - strand, within Dsui_0077at 74.019 kb on + strand, within Dsui_0077at 74.033 kb on - strand, within Dsui_0077at 74.057 kb on - strand, within Dsui_0077at 74.086 kb on + strand, within Dsui_0077at 74.094 kb on - strand, within Dsui_0077at 74.110 kb on - strand, within Dsui_0077at 74.128 kb on + strand, within Dsui_0077at 74.136 kb on - strand, within Dsui_0077at 74.140 kb on - strand, within Dsui_0077at 74.188 kb on - strand, within Dsui_0077at 74.189 kb on + strand, within Dsui_0077at 74.194 kb on + strand, within Dsui_0077at 74.194 kb on + strand, within Dsui_0077at 74.197 kb on - strand, within Dsui_0077at 74.202 kb on - strand, within Dsui_0077at 74.206 kb on + strand, within Dsui_0077at 74.222 kb on + strand, within Dsui_0077at 74.229 kb on + strand, within Dsui_0077at 74.242 kb on + strand, within Dsui_0077at 74.243 kb on - strand, within Dsui_0077at 74.274 kb on + strand, within Dsui_0077at 74.284 kb on + strand, within Dsui_0077at 74.284 kb on - strand, within Dsui_0077at 74.294 kb on + strand, within Dsui_0077at 74.297 kb on - strand, within Dsui_0077at 74.301 kb on + strand, within Dsui_0077at 74.369 kb on - strand, within Dsui_0077at 74.418 kb on + strand, within Dsui_0077at 74.435 kb on + strand, within Dsui_0077at 74.457 kb on + strand, within Dsui_0077at 74.465 kb on - strand, within Dsui_0077at 74.465 kb on - strand, within Dsui_0077at 74.476 kb on + strand, within Dsui_0077at 74.486 kb on - strand, within Dsui_0077at 74.523 kb on + strandat 74.531 kb on - strandat 74.536 kb on - strandat 74.578 kb on + strandat 74.616 kb on + strandat 74.624 kb on - strandat 74.624 kb on - strandat 74.661 kb on + strandat 74.667 kb on - strandat 74.669 kb on + strandat 74.669 kb on + strandat 74.680 kb on + strandat 74.688 kb on - strandat 74.719 kb on - strandat 74.721 kb on + strandat 74.739 kb on - strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.807 kb on + strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.870 kb on - strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.920 kb on + strand, within Dsui_0078at 74.928 kb on - strand, within Dsui_0078at 74.930 kb on + strand, within Dsui_0078at 74.978 kb on - strand, within Dsui_0078at 75.012 kb on + strand, within Dsui_0078at 75.019 kb on + strand, within Dsui_0078at 75.049 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.118 kb on + strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.232 kb on - strand, within Dsui_0078at 75.251 kb on - strand, within Dsui_0078at 75.309 kb on + strand, within Dsui_0078at 75.360 kb on + strand, within Dsui_0078at 75.401 kb on + strand, within Dsui_0078at 75.464 kb on - strand, within Dsui_0078at 75.538 kb on - strandat 75.557 kb on - strandat 75.573 kb on - strandat 75.599 kb on - strandat 75.630 kb on + strandat 75.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.004 mg/ml
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72,371 - Dsui_0075 0.51 -0.3
72,376 + Dsui_0075 0.52 -0.0
72,376 + Dsui_0075 0.52 +1.0
72,441 + Dsui_0075 0.59 -1.4
72,442 + Dsui_0075 0.59 -0.6
72,442 + Dsui_0075 0.59 -0.6
72,467 - Dsui_0075 0.62 -0.0
72,473 - Dsui_0075 0.62 -0.3
72,476 + Dsui_0075 0.63 +1.0
72,496 + Dsui_0075 0.65 -1.0
72,498 + Dsui_0075 0.65 -0.0
72,498 + Dsui_0075 0.65 +1.0
72,504 - Dsui_0075 0.66 +0.0
72,508 - Dsui_0075 0.66 -0.0
72,565 + Dsui_0075 0.73 -1.0
72,573 - Dsui_0075 0.73 -0.1
72,612 + Dsui_0075 0.78 -0.0
72,643 + Dsui_0075 0.81 +1.0
72,648 + Dsui_0075 0.82 +1.0
72,648 + Dsui_0075 0.82 -1.0
72,651 - Dsui_0075 0.82 +0.0
72,656 - Dsui_0075 0.83 -0.1
72,656 - Dsui_0075 0.83 -0.2
72,690 - Dsui_0075 0.86 -0.2
72,728 - -0.1
72,738 - +0.0
72,765 + -0.6
72,773 + -0.6
72,840 + +1.0
72,840 + -0.0
72,840 + +1.0
72,840 + -0.6
72,843 - +0.2
72,848 - +0.1
72,848 - -0.1
72,848 - -0.3
72,865 + -0.0
72,865 + +1.0
72,865 + -1.4
72,873 - Dsui_0076 0.11 -0.4
72,895 - Dsui_0076 0.15 -0.5
72,897 + Dsui_0076 0.16 +1.0
72,918 - Dsui_0076 0.20 -0.8
72,918 - Dsui_0076 0.20 -0.6
72,934 + Dsui_0076 0.22 +1.0
72,937 - Dsui_0076 0.23 -0.9
72,991 + Dsui_0076 0.33 -0.0
73,038 - Dsui_0076 0.42 -1.2
73,053 - Dsui_0076 0.44 -1.7
73,076 - Dsui_0076 0.49 -0.4
73,081 - Dsui_0076 0.50 -0.8
73,131 - Dsui_0076 0.59 -0.6
73,131 - Dsui_0076 0.59 -0.6
73,164 + Dsui_0076 0.65 +1.0
73,164 + Dsui_0076 0.65 -1.8
73,172 - Dsui_0076 0.66 -0.4
73,185 - Dsui_0076 0.69 -0.6
73,190 - Dsui_0076 0.70 -0.6
73,194 - Dsui_0076 0.70 -0.4
73,285 + Dsui_0076 0.87 +1.0
73,287 - Dsui_0076 0.87 -1.1
73,293 - Dsui_0076 0.89 -0.6
73,293 - Dsui_0076 0.89 -0.7
73,295 + Dsui_0076 0.89 +1.0
73,303 - -0.3
73,313 - -0.4
73,370 - -0.0
73,373 + +1.0
73,376 - -5.9
73,381 - +0.1
73,381 - +0.2
73,381 - +0.0
73,381 - -0.0
73,425 + +1.0
73,435 + +1.0
73,501 - Dsui_0077 0.12 -4.0
73,509 + Dsui_0077 0.12 -2.2
73,532 + Dsui_0077 0.14 -1.0
73,532 + Dsui_0077 0.14 -1.0
73,545 - Dsui_0077 0.15 -4.5
73,593 - Dsui_0077 0.19 -6.4
73,618 + Dsui_0077 0.21 -0.0
73,639 + Dsui_0077 0.22 -0.0
73,642 - Dsui_0077 0.23 -4.0
73,674 + Dsui_0077 0.25 -0.6
73,681 + Dsui_0077 0.26 -0.0
73,689 - Dsui_0077 0.26 -0.6
73,689 - Dsui_0077 0.26 -4.4
73,689 - Dsui_0077 0.26 -3.4
73,689 - Dsui_0077 0.26 -4.6
73,697 - Dsui_0077 0.27 -3.9
73,710 + Dsui_0077 0.28 -1.6
73,731 + Dsui_0077 0.29 +1.0
73,739 - Dsui_0077 0.30 -5.2
73,739 - Dsui_0077 0.30 -4.7
73,739 - Dsui_0077 0.30 -3.8
73,798 + Dsui_0077 0.35 +2.0
73,812 + Dsui_0077 0.36 -1.4
73,812 + Dsui_0077 0.36 -2.8
73,830 + Dsui_0077 0.37 -0.0
73,840 - Dsui_0077 0.38 -5.6
73,844 - Dsui_0077 0.38 -4.2
73,878 - Dsui_0077 0.41 -3.3
73,901 - Dsui_0077 0.43 -5.1
73,915 + Dsui_0077 0.44 +1.0
73,944 + Dsui_0077 0.46 -0.0
73,990 + Dsui_0077 0.49 +1.0
74,000 + Dsui_0077 0.50 +1.0
74,006 + Dsui_0077 0.51 -0.0
74,008 - Dsui_0077 0.51 -4.8
74,008 - Dsui_0077 0.51 -5.0
74,019 + Dsui_0077 0.52 +1.0
74,033 - Dsui_0077 0.53 -4.6
74,057 - Dsui_0077 0.55 -3.9
74,086 + Dsui_0077 0.57 +1.0
74,094 - Dsui_0077 0.57 -4.1
74,110 - Dsui_0077 0.59 -5.2
74,128 + Dsui_0077 0.60 +1.0
74,136 - Dsui_0077 0.61 -3.3
74,140 - Dsui_0077 0.61 -3.8
74,188 - Dsui_0077 0.65 -5.3
74,189 + Dsui_0077 0.65 +1.0
74,194 + Dsui_0077 0.65 -1.4
74,194 + Dsui_0077 0.65 +1.0
74,197 - Dsui_0077 0.65 -6.0
74,202 - Dsui_0077 0.66 -4.6
74,206 + Dsui_0077 0.66 +1.0
74,222 + Dsui_0077 0.67 +1.0
74,229 + Dsui_0077 0.68 +1.0
74,242 + Dsui_0077 0.69 +1.0
74,243 - Dsui_0077 0.69 -2.3
74,274 + Dsui_0077 0.71 -0.0
74,284 + Dsui_0077 0.72 +1.0
74,284 - Dsui_0077 0.72 -5.4
74,294 + Dsui_0077 0.73 +1.0
74,297 - Dsui_0077 0.73 -2.8
74,301 + Dsui_0077 0.73 -0.6
74,369 - Dsui_0077 0.79 -3.0
74,418 + Dsui_0077 0.83 -1.8
74,435 + Dsui_0077 0.84 +1.0
74,457 + Dsui_0077 0.86 -0.0
74,465 - Dsui_0077 0.86 -3.9
74,465 - Dsui_0077 0.86 -4.1
74,476 + Dsui_0077 0.87 -1.4
74,486 - Dsui_0077 0.88 -3.6
74,523 + +1.0
74,531 - -3.8
74,536 - -4.5
74,578 + +1.0
74,616 + +1.0
74,624 - -3.1
74,624 - -3.1
74,661 + +1.0
74,667 - -0.1
74,669 + +0.4
74,669 + +1.0
74,680 + -0.0
74,688 - -0.4
74,719 - -3.1
74,721 + +1.0
74,739 - Dsui_0078 0.10 -3.0
74,799 + Dsui_0078 0.16 -1.8
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 -0.6
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 +1.0
74,799 + Dsui_0078 0.16 -0.0
74,807 + Dsui_0078 0.17 +1.0
74,807 - Dsui_0078 0.17 -4.2
74,807 - Dsui_0078 0.17 -3.0
74,870 - Dsui_0078 0.23 -2.8
74,903 + Dsui_0078 0.27 -0.0
74,903 + Dsui_0078 0.27 +1.0
74,916 - Dsui_0078 0.28 -3.6
74,916 - Dsui_0078 0.28 -3.0
74,920 + Dsui_0078 0.29 -0.0
74,928 - Dsui_0078 0.29 -3.6
74,930 + Dsui_0078 0.30 +1.0
74,978 - Dsui_0078 0.34 -2.7
75,012 + Dsui_0078 0.38 -1.0
75,019 + Dsui_0078 0.39 -1.1
75,049 + Dsui_0078 0.42 -0.0
75,082 + Dsui_0078 0.45 -0.6
75,082 + Dsui_0078 0.45 -1.6
75,082 + Dsui_0078 0.45 -0.6
75,090 - Dsui_0078 0.46 -2.2
75,090 - Dsui_0078 0.46 -2.0
75,090 - Dsui_0078 0.46 -2.3
75,118 + Dsui_0078 0.49 -0.0
75,126 - Dsui_0078 0.50 -1.4
75,126 - Dsui_0078 0.50 -1.5
75,126 - Dsui_0078 0.50 -1.3
75,126 - Dsui_0078 0.50 -2.3
75,164 + Dsui_0078 0.53 +1.0
75,164 + Dsui_0078 0.53 -0.6
75,232 - Dsui_0078 0.60 -0.9
75,251 - Dsui_0078 0.62 -1.6
75,309 + Dsui_0078 0.68 -0.0
75,360 + Dsui_0078 0.73 +1.0
75,401 + Dsui_0078 0.78 +1.0
75,464 - Dsui_0078 0.84 -2.2
75,538 - -1.2
75,557 - -0.8
75,573 - -2.5
75,599 - +0.1
75,630 + +1.0
75,635 + +1.0

Or see this region's nucleotide sequence