Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24885

Experiment: D-Sorbitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24875 and BWI76_RS24880 are separated by 13 nucleotidesBWI76_RS24880 and BWI76_RS24885 are separated by 26 nucleotidesBWI76_RS24885 and BWI76_RS24890 are separated by 5 nucleotides BWI76_RS24875: BWI76_RS24875 - tagatose-1,6-bisphosphate aldolase, at 5,184,025 to 5,185,296 _RS24875 BWI76_RS24880: BWI76_RS24880 - PTS galactitol transporter subunit IIA, at 5,185,310 to 5,185,777 _RS24880 BWI76_RS24885: BWI76_RS24885 - PTS galactitol transporter subunit IIB, at 5,185,804 to 5,186,088 _RS24885 BWI76_RS24890: BWI76_RS24890 - PTS system galactitol-specific transporter subunit IIC, at 5,186,094 to 5,187,467 _RS24890 Position (kb) 5185 5186 5187Strain fitness (log2 ratio) -1 0 1 2 3at 5184.871 kb on + strand, within BWI76_RS24875at 5184.879 kb on - strand, within BWI76_RS24875at 5184.879 kb on - strand, within BWI76_RS24875at 5185.029 kb on - strand, within BWI76_RS24875at 5185.049 kb on + strand, within BWI76_RS24875at 5185.072 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.175 kb on - strandat 5185.175 kb on - strandat 5185.175 kb on - strandat 5185.175 kb on - strandat 5185.242 kb on + strandat 5185.267 kb on + strandat 5185.437 kb on - strand, within BWI76_RS24880at 5185.495 kb on + strand, within BWI76_RS24880at 5185.495 kb on - strand, within BWI76_RS24880at 5185.644 kb on - strand, within BWI76_RS24880at 5185.837 kb on - strand, within BWI76_RS24885at 5185.965 kb on - strand, within BWI76_RS24885at 5185.991 kb on + strand, within BWI76_RS24885at 5186.091 kb on + strandat 5186.200 kb on + strandat 5186.200 kb on + strandat 5186.349 kb on - strand, within BWI76_RS24890at 5186.355 kb on + strand, within BWI76_RS24890at 5186.496 kb on + strand, within BWI76_RS24890at 5186.795 kb on - strand, within BWI76_RS24890at 5186.815 kb on - strand, within BWI76_RS24890at 5186.865 kb on - strand, within BWI76_RS24890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
remove
5,184,871 + BWI76_RS24875 0.67 -0.3
5,184,879 - BWI76_RS24875 0.67 +0.5
5,184,879 - BWI76_RS24875 0.67 -0.7
5,185,029 - BWI76_RS24875 0.79 -0.1
5,185,049 + BWI76_RS24875 0.81 +0.1
5,185,072 + BWI76_RS24875 0.82 +1.2
5,185,167 + BWI76_RS24875 0.90 +0.3
5,185,167 + BWI76_RS24875 0.90 +3.1
5,185,167 + BWI76_RS24875 0.90 +0.7
5,185,167 + BWI76_RS24875 0.90 -1.0
5,185,175 - +0.1
5,185,175 - -0.3
5,185,175 - +0.7
5,185,175 - +0.1
5,185,242 + -0.3
5,185,267 + -0.3
5,185,437 - BWI76_RS24880 0.27 +0.6
5,185,495 + BWI76_RS24880 0.40 +0.4
5,185,495 - BWI76_RS24880 0.40 -1.5
5,185,644 - BWI76_RS24880 0.71 +0.6
5,185,837 - BWI76_RS24885 0.12 -0.7
5,185,965 - BWI76_RS24885 0.56 +1.7
5,185,991 + BWI76_RS24885 0.66 -1.1
5,186,091 + +0.4
5,186,200 + -0.0
5,186,200 + -0.3
5,186,349 - BWI76_RS24890 0.19 +1.1
5,186,355 + BWI76_RS24890 0.19 +0.1
5,186,496 + BWI76_RS24890 0.29 -0.2
5,186,795 - BWI76_RS24890 0.51 +0.6
5,186,815 - BWI76_RS24890 0.52 -0.2
5,186,865 - BWI76_RS24890 0.56 +1.1

Or see this region's nucleotide sequence