Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09735

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09725 and BWI76_RS09730 are separated by 53 nucleotidesBWI76_RS09730 and BWI76_RS09735 are separated by 203 nucleotidesBWI76_RS09735 and BWI76_RS09740 are separated by 51 nucleotides BWI76_RS09725: BWI76_RS09725 - MurR/RpiR family transcriptional regulator, at 2,037,972 to 2,038,829 _RS09725 BWI76_RS09730: BWI76_RS09730 - pyruvate formate lyase 1-activating protein, at 2,038,883 to 2,039,623 _RS09730 BWI76_RS09735: BWI76_RS09735 - formate acetyltransferase, at 2,039,827 to 2,042,109 _RS09735 BWI76_RS09740: BWI76_RS09740 - formate transporter FocA, at 2,042,161 to 2,043,018 _RS09740 Position (kb) 2039 2040 2041 2042 2043Strain fitness (log2 ratio) -1 0 1 2at 2038.881 kb on + strandat 2039.113 kb on - strand, within BWI76_RS09730at 2039.385 kb on - strand, within BWI76_RS09730at 2039.572 kb on - strandat 2039.746 kb on - strandat 2039.846 kb on - strandat 2039.846 kb on - strandat 2039.900 kb on + strandat 2040.199 kb on - strand, within BWI76_RS09735at 2040.336 kb on - strand, within BWI76_RS09735at 2040.336 kb on - strand, within BWI76_RS09735at 2040.562 kb on + strand, within BWI76_RS09735at 2040.717 kb on + strand, within BWI76_RS09735at 2040.892 kb on + strand, within BWI76_RS09735at 2041.032 kb on - strand, within BWI76_RS09735at 2041.073 kb on - strand, within BWI76_RS09735at 2041.439 kb on - strand, within BWI76_RS09735at 2041.554 kb on - strand, within BWI76_RS09735at 2042.081 kb on + strandat 2042.484 kb on + strand, within BWI76_RS09740at 2042.584 kb on + strand, within BWI76_RS09740at 2042.672 kb on - strand, within BWI76_RS09740at 2042.754 kb on + strand, within BWI76_RS09740at 2042.864 kb on - strand, within BWI76_RS09740at 2042.884 kb on + strand, within BWI76_RS09740at 2042.884 kb on + strand, within BWI76_RS09740at 2042.884 kb on + strand, within BWI76_RS09740at 2042.884 kb on + strand, within BWI76_RS09740at 2042.892 kb on - strand, within BWI76_RS09740at 2042.892 kb on - strand, within BWI76_RS09740at 2042.892 kb on - strand, within BWI76_RS09740at 2042.892 kb on - strand, within BWI76_RS09740at 2042.892 kb on - strand, within BWI76_RS09740at 2042.900 kb on - strand, within BWI76_RS09740at 2042.902 kb on - strand, within BWI76_RS09740at 2042.902 kb on - strand, within BWI76_RS09740at 2042.910 kb on + strand, within BWI76_RS09740at 2042.976 kb on + strandat 2042.978 kb on + strandat 2043.004 kb on + strandat 2043.018 kb on + strandat 2043.026 kb on - strandat 2043.028 kb on + strandat 2043.030 kb on - strandat 2043.030 kb on - strandat 2043.063 kb on + strandat 2043.063 kb on + strandat 2043.071 kb on - strandat 2043.071 kb on - strandat 2043.071 kb on - strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.088 kb on + strandat 2043.096 kb on - strandat 2043.096 kb on - strandat 2043.096 kb on - strandat 2043.096 kb on - strandat 2043.096 kb on - strandat 2043.097 kb on - strandat 2043.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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2,038,881 + -1.0
2,039,113 - BWI76_RS09730 0.31 -0.3
2,039,385 - BWI76_RS09730 0.68 +1.1
2,039,572 - +1.2
2,039,746 - -0.2
2,039,846 - -0.1
2,039,846 - +0.4
2,039,900 + +2.6
2,040,199 - BWI76_RS09735 0.16 +0.7
2,040,336 - BWI76_RS09735 0.22 -1.0
2,040,336 - BWI76_RS09735 0.22 +0.2
2,040,562 + BWI76_RS09735 0.32 -0.8
2,040,717 + BWI76_RS09735 0.39 -0.0
2,040,892 + BWI76_RS09735 0.47 -1.7
2,041,032 - BWI76_RS09735 0.53 -0.2
2,041,073 - BWI76_RS09735 0.55 +0.2
2,041,439 - BWI76_RS09735 0.71 -0.4
2,041,554 - BWI76_RS09735 0.76 +0.1
2,042,081 + -0.5
2,042,484 + BWI76_RS09740 0.38 -0.3
2,042,584 + BWI76_RS09740 0.49 -1.2
2,042,672 - BWI76_RS09740 0.60 -0.0
2,042,754 + BWI76_RS09740 0.69 +1.3
2,042,864 - BWI76_RS09740 0.82 +0.3
2,042,884 + BWI76_RS09740 0.84 +1.1
2,042,884 + BWI76_RS09740 0.84 +0.0
2,042,884 + BWI76_RS09740 0.84 +0.5
2,042,884 + BWI76_RS09740 0.84 +0.3
2,042,892 - BWI76_RS09740 0.85 +0.1
2,042,892 - BWI76_RS09740 0.85 +0.4
2,042,892 - BWI76_RS09740 0.85 +0.2
2,042,892 - BWI76_RS09740 0.85 -0.9
2,042,892 - BWI76_RS09740 0.85 -0.4
2,042,900 - BWI76_RS09740 0.86 -0.3
2,042,902 - BWI76_RS09740 0.86 -0.3
2,042,902 - BWI76_RS09740 0.86 -1.0
2,042,910 + BWI76_RS09740 0.87 -0.3
2,042,976 + -0.8
2,042,978 + -0.1
2,043,004 + -0.4
2,043,018 + -0.0
2,043,026 - -0.6
2,043,028 + -0.3
2,043,030 - +0.2
2,043,030 - -0.0
2,043,063 + -0.6
2,043,063 + +1.8
2,043,071 - +0.7
2,043,071 - +0.3
2,043,071 - +0.5
2,043,088 + -0.1
2,043,088 + +0.3
2,043,088 + +0.6
2,043,088 + +0.2
2,043,088 + -0.7
2,043,088 + +0.1
2,043,088 + +2.3
2,043,088 + -0.7
2,043,088 + +0.2
2,043,088 + -0.1
2,043,096 - +0.6
2,043,096 - +1.3
2,043,096 - +0.1
2,043,096 - +0.3
2,043,096 - -1.0
2,043,097 - +0.3
2,043,097 - -0.6

Or see this region's nucleotide sequence