Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31955

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31950 and AZOBR_RS31955 are separated by 340 nucleotidesAZOBR_RS31955 and AZOBR_RS31960 overlap by 4 nucleotidesAZOBR_RS31960 and AZOBR_RS31965 are separated by 192 nucleotides AZOBR_RS31950: AZOBR_RS31950 - GntR family transcriptional regulator, at 534,967 to 535,656 _RS31950 AZOBR_RS31955: AZOBR_RS31955 - lipid kinase, at 535,997 to 536,881 _RS31955 AZOBR_RS31960: AZOBR_RS31960 - HAD family hydrolase, at 536,878 to 537,555 _RS31960 AZOBR_RS31965: AZOBR_RS31965 - membrane protein, at 537,748 to 538,887 _RS31965 Position (kb) 535 536 537Strain fitness (log2 ratio) -2 -1 0 1 2at 535.553 kb on + strand, within AZOBR_RS31950at 535.553 kb on + strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.593 kb on - strandat 535.593 kb on - strandat 536.012 kb on + strandat 536.012 kb on + strandat 536.012 kb on + strandat 536.013 kb on - strandat 536.013 kb on - strandat 536.223 kb on + strand, within AZOBR_RS31955at 536.224 kb on - strand, within AZOBR_RS31955at 536.933 kb on + strandat 536.933 kb on + strandat 536.934 kb on - strandat 537.126 kb on - strand, within AZOBR_RS31960at 537.494 kb on + strandat 537.495 kb on - strandat 537.495 kb on - strandat 537.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
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535,553 + AZOBR_RS31950 0.85 +0.4
535,553 + AZOBR_RS31950 0.85 +0.5
535,554 - AZOBR_RS31950 0.85 -1.5
535,554 - AZOBR_RS31950 0.85 -0.9
535,554 - AZOBR_RS31950 0.85 -2.4
535,554 - AZOBR_RS31950 0.85 +0.2
535,593 - +0.4
535,593 - -0.8
536,012 + +0.8
536,012 + +1.0
536,012 + +2.4
536,013 - +0.6
536,013 - +0.5
536,223 + AZOBR_RS31955 0.26 +1.1
536,224 - AZOBR_RS31955 0.26 +0.5
536,933 + +0.3
536,933 + +0.8
536,934 - -1.5
537,126 - AZOBR_RS31960 0.37 +0.4
537,494 + +0.7
537,495 - +0.5
537,495 - +2.3
537,495 - +0.3

Or see this region's nucleotide sequence