Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31915

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31910 and AZOBR_RS31915 are separated by 245 nucleotidesAZOBR_RS31915 and AZOBR_RS31920 are separated by 31 nucleotidesAZOBR_RS31920 and AZOBR_RS31925 are separated by 97 nucleotides AZOBR_RS31910: AZOBR_RS31910 - formyl-CoA transferase, at 523,847 to 525,097 _RS31910 AZOBR_RS31915: AZOBR_RS31915 - MarR family transcriptional regulator, at 525,343 to 526,320 _RS31915 AZOBR_RS31920: AZOBR_RS31920 - hypothetical protein, at 526,352 to 526,612 _RS31920 AZOBR_RS31925: AZOBR_RS31925 - MerR family transcriptional regulator, at 526,710 to 527,171 _RS31925 Position (kb) 525 526 527Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 524.526 kb on - strand, within AZOBR_RS31910at 524.645 kb on + strand, within AZOBR_RS31910at 524.645 kb on + strand, within AZOBR_RS31910at 524.645 kb on + strand, within AZOBR_RS31910at 524.645 kb on + strand, within AZOBR_RS31910at 524.646 kb on - strand, within AZOBR_RS31910at 524.646 kb on - strand, within AZOBR_RS31910at 524.646 kb on - strand, within AZOBR_RS31910at 524.646 kb on - strandat 524.651 kb on + strand, within AZOBR_RS31910at 524.651 kb on + strand, within AZOBR_RS31910at 524.651 kb on + strand, within AZOBR_RS31910at 524.651 kb on + strand, within AZOBR_RS31910at 524.651 kb on + strand, within AZOBR_RS31910at 524.652 kb on - strand, within AZOBR_RS31910at 524.652 kb on - strand, within AZOBR_RS31910at 524.652 kb on - strand, within AZOBR_RS31910at 524.652 kb on - strand, within AZOBR_RS31910at 524.652 kb on - strand, within AZOBR_RS31910at 524.652 kb on - strand, within AZOBR_RS31910at 524.690 kb on - strand, within AZOBR_RS31910at 524.729 kb on + strand, within AZOBR_RS31910at 524.729 kb on + strand, within AZOBR_RS31910at 524.729 kb on + strand, within AZOBR_RS31910at 524.729 kb on + strand, within AZOBR_RS31910at 524.730 kb on - strand, within AZOBR_RS31910at 524.730 kb on - strand, within AZOBR_RS31910at 524.810 kb on + strand, within AZOBR_RS31910at 524.810 kb on + strand, within AZOBR_RS31910at 524.810 kb on + strand, within AZOBR_RS31910at 524.810 kb on + strand, within AZOBR_RS31910at 524.945 kb on + strand, within AZOBR_RS31910at 524.945 kb on + strand, within AZOBR_RS31910at 524.945 kb on + strand, within AZOBR_RS31910at 524.946 kb on - strand, within AZOBR_RS31910at 524.946 kb on - strand, within AZOBR_RS31910at 525.051 kb on - strandat 525.051 kb on - strandat 525.051 kb on - strandat 525.051 kb on - strandat 525.294 kb on + strandat 525.294 kb on + strandat 525.295 kb on - strandat 525.295 kb on - strandat 525.295 kb on - strandat 525.295 kb on - strandat 525.295 kb on - strandat 525.301 kb on - strandat 525.301 kb on - strandat 525.301 kb on - strandat 525.342 kb on + strandat 525.872 kb on + strand, within AZOBR_RS31915at 525.872 kb on + strand, within AZOBR_RS31915at 525.872 kb on + strand, within AZOBR_RS31915at 525.872 kb on + strand, within AZOBR_RS31915at 525.872 kb on + strand, within AZOBR_RS31915at 525.873 kb on - strand, within AZOBR_RS31915at 525.873 kb on - strand, within AZOBR_RS31915at 525.873 kb on - strand, within AZOBR_RS31915at 525.873 kb on - strand, within AZOBR_RS31915at 525.873 kb on - strand, within AZOBR_RS31915at 525.873 kb on - strand, within AZOBR_RS31915at 525.877 kb on + strand, within AZOBR_RS31915at 525.877 kb on + strand, within AZOBR_RS31915at 525.877 kb on + strand, within AZOBR_RS31915at 525.877 kb on + strand, within AZOBR_RS31915at 525.877 kb on + strand, within AZOBR_RS31915at 525.877 kb on + strand, within AZOBR_RS31915at 525.877 kb on + strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.878 kb on - strand, within AZOBR_RS31915at 525.880 kb on + strand, within AZOBR_RS31915at 525.880 kb on + strand, within AZOBR_RS31915at 525.880 kb on + strand, within AZOBR_RS31915at 525.880 kb on + strand, within AZOBR_RS31915at 525.881 kb on - strand, within AZOBR_RS31915at 525.881 kb on - strand, within AZOBR_RS31915at 525.881 kb on - strand, within AZOBR_RS31915at 525.881 kb on - strand, within AZOBR_RS31915at 526.004 kb on + strand, within AZOBR_RS31915at 526.004 kb on + strand, within AZOBR_RS31915at 526.005 kb on - strand, within AZOBR_RS31915at 526.005 kb on - strand, within AZOBR_RS31915at 526.005 kb on - strand, within AZOBR_RS31915at 526.005 kb on - strand, within AZOBR_RS31915at 526.036 kb on - strand, within AZOBR_RS31915at 526.411 kb on - strand, within AZOBR_RS31920at 526.411 kb on - strand, within AZOBR_RS31920at 526.411 kb on - strand, within AZOBR_RS31920at 526.411 kb on - strand, within AZOBR_RS31920at 526.422 kb on + strand, within AZOBR_RS31920at 526.803 kb on + strand, within AZOBR_RS31925at 526.804 kb on - strand, within AZOBR_RS31925at 527.282 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
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524,526 - AZOBR_RS31910 0.54 +0.3
524,645 + AZOBR_RS31910 0.64 -0.4
524,645 + AZOBR_RS31910 0.64 +0.2
524,645 + AZOBR_RS31910 0.64 -2.0
524,645 + AZOBR_RS31910 0.64 +0.3
524,646 - AZOBR_RS31910 0.64 +0.6
524,646 - AZOBR_RS31910 0.64 -0.5
524,646 - AZOBR_RS31910 0.64 +0.5
524,646 - +1.2
524,651 + AZOBR_RS31910 0.64 -1.4
524,651 + AZOBR_RS31910 0.64 -0.8
524,651 + AZOBR_RS31910 0.64 +0.5
524,651 + AZOBR_RS31910 0.64 -0.3
524,651 + AZOBR_RS31910 0.64 +0.4
524,652 - AZOBR_RS31910 0.64 -0.5
524,652 - AZOBR_RS31910 0.64 +1.1
524,652 - AZOBR_RS31910 0.64 -0.0
524,652 - AZOBR_RS31910 0.64 -1.9
524,652 - AZOBR_RS31910 0.64 -0.3
524,652 - AZOBR_RS31910 0.64 -0.7
524,690 - AZOBR_RS31910 0.67 +1.0
524,729 + AZOBR_RS31910 0.71 +0.2
524,729 + AZOBR_RS31910 0.71 +0.2
524,729 + AZOBR_RS31910 0.71 -0.5
524,729 + AZOBR_RS31910 0.71 -0.3
524,730 - AZOBR_RS31910 0.71 -1.3
524,730 - AZOBR_RS31910 0.71 +0.5
524,810 + AZOBR_RS31910 0.77 +0.5
524,810 + AZOBR_RS31910 0.77 -1.6
524,810 + AZOBR_RS31910 0.77 +0.5
524,810 + AZOBR_RS31910 0.77 -2.1
524,945 + AZOBR_RS31910 0.88 +1.0
524,945 + AZOBR_RS31910 0.88 -0.3
524,945 + AZOBR_RS31910 0.88 -0.5
524,946 - AZOBR_RS31910 0.88 -0.2
524,946 - AZOBR_RS31910 0.88 -0.0
525,051 - -0.2
525,051 - -0.3
525,051 - -0.6
525,051 - +0.1
525,294 + -2.2
525,294 + -0.2
525,295 - +0.2
525,295 - -0.7
525,295 - -0.9
525,295 - -1.1
525,295 - +0.1
525,301 - -0.1
525,301 - -1.3
525,301 - -1.0
525,342 + +1.3
525,872 + AZOBR_RS31915 0.54 +0.4
525,872 + AZOBR_RS31915 0.54 -0.3
525,872 + AZOBR_RS31915 0.54 +0.1
525,872 + AZOBR_RS31915 0.54 +0.1
525,872 + AZOBR_RS31915 0.54 -0.3
525,873 - AZOBR_RS31915 0.54 +0.5
525,873 - AZOBR_RS31915 0.54 -0.1
525,873 - AZOBR_RS31915 0.54 -1.7
525,873 - AZOBR_RS31915 0.54 -0.4
525,873 - AZOBR_RS31915 0.54 -0.1
525,873 - AZOBR_RS31915 0.54 +0.0
525,877 + AZOBR_RS31915 0.55 -1.5
525,877 + AZOBR_RS31915 0.55 -0.8
525,877 + AZOBR_RS31915 0.55 +0.4
525,877 + AZOBR_RS31915 0.55 -0.2
525,877 + AZOBR_RS31915 0.55 +0.3
525,877 + AZOBR_RS31915 0.55 -1.4
525,877 + AZOBR_RS31915 0.55 +1.0
525,878 - AZOBR_RS31915 0.55 -0.4
525,878 - AZOBR_RS31915 0.55 -3.9
525,878 - AZOBR_RS31915 0.55 -0.9
525,878 - AZOBR_RS31915 0.55 +0.5
525,878 - AZOBR_RS31915 0.55 -1.2
525,878 - AZOBR_RS31915 0.55 -1.0
525,878 - AZOBR_RS31915 0.55 -3.1
525,878 - AZOBR_RS31915 0.55 -0.1
525,878 - AZOBR_RS31915 0.55 -0.2
525,880 + AZOBR_RS31915 0.55 -0.3
525,880 + AZOBR_RS31915 0.55 -0.0
525,880 + AZOBR_RS31915 0.55 +0.6
525,880 + AZOBR_RS31915 0.55 +0.2
525,881 - AZOBR_RS31915 0.55 -0.5
525,881 - AZOBR_RS31915 0.55 +0.2
525,881 - AZOBR_RS31915 0.55 +0.7
525,881 - AZOBR_RS31915 0.55 -2.3
526,004 + AZOBR_RS31915 0.68 +0.2
526,004 + AZOBR_RS31915 0.68 +0.0
526,005 - AZOBR_RS31915 0.68 -0.3
526,005 - AZOBR_RS31915 0.68 +0.5
526,005 - AZOBR_RS31915 0.68 +0.1
526,005 - AZOBR_RS31915 0.68 -0.1
526,036 - AZOBR_RS31915 0.71 -2.7
526,411 - AZOBR_RS31920 0.23 +0.0
526,411 - AZOBR_RS31920 0.23 +0.7
526,411 - AZOBR_RS31920 0.23 +0.3
526,411 - AZOBR_RS31920 0.23 -0.0
526,422 + AZOBR_RS31920 0.27 +0.0
526,803 + AZOBR_RS31925 0.20 -0.5
526,804 - AZOBR_RS31925 0.20 -0.4
527,282 + +2.3

Or see this region's nucleotide sequence