Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26025

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26015 and AZOBR_RS26020 are separated by 380 nucleotidesAZOBR_RS26020 and AZOBR_RS26025 are separated by 22 nucleotidesAZOBR_RS26025 and AZOBR_RS26030 are separated by 198 nucleotides AZOBR_RS26015: AZOBR_RS26015 - hypothetical protein, at 888,176 to 888,523 _RS26015 AZOBR_RS26020: AZOBR_RS26020 - hypothetical protein, at 888,904 to 889,401 _RS26020 AZOBR_RS26025: AZOBR_RS26025 - alpha gluctosidase galactosidase, at 889,424 to 890,719 _RS26025 AZOBR_RS26030: AZOBR_RS26030 - beta-glucosidase, at 890,918 to 892,252 _RS26030 Position (kb) 889 890 891Strain fitness (log2 ratio) -3 -2 -1 0 1at 888.465 kb on + strand, within AZOBR_RS26015at 888.465 kb on + strand, within AZOBR_RS26015at 888.466 kb on - strand, within AZOBR_RS26015at 888.466 kb on - strand, within AZOBR_RS26015at 888.490 kb on + strandat 888.529 kb on - strandat 888.529 kb on - strandat 888.596 kb on + strandat 888.596 kb on + strandat 888.596 kb on + strandat 888.597 kb on - strandat 888.597 kb on - strandat 888.637 kb on + strandat 888.637 kb on + strandat 888.638 kb on - strandat 888.638 kb on - strandat 888.696 kb on + strandat 888.696 kb on + strandat 888.751 kb on - strandat 888.777 kb on + strandat 888.777 kb on + strandat 888.778 kb on - strandat 888.784 kb on - strandat 888.805 kb on + strandat 888.944 kb on - strandat 889.425 kb on + strandat 889.425 kb on + strandat 889.426 kb on - strandat 889.426 kb on - strandat 889.443 kb on + strandat 889.444 kb on - strandat 889.444 kb on - strandat 889.723 kb on - strand, within AZOBR_RS26025at 889.723 kb on - strand, within AZOBR_RS26025at 889.938 kb on + strand, within AZOBR_RS26025at 889.938 kb on + strand, within AZOBR_RS26025at 889.939 kb on - strand, within AZOBR_RS26025at 889.948 kb on + strand, within AZOBR_RS26025at 889.948 kb on + strand, within AZOBR_RS26025at 889.948 kb on + strand, within AZOBR_RS26025at 889.948 kb on + strand, within AZOBR_RS26025at 889.949 kb on - strandat 890.223 kb on + strand, within AZOBR_RS26025at 890.223 kb on + strand, within AZOBR_RS26025at 890.223 kb on + strand, within AZOBR_RS26025at 890.644 kb on - strandat 890.788 kb on - strandat 890.812 kb on + strandat 890.826 kb on - strandat 890.828 kb on + strandat 890.893 kb on + strandat 890.894 kb on - strandat 890.973 kb on - strandat 891.086 kb on + strand, within AZOBR_RS26030at 891.087 kb on - strand, within AZOBR_RS26030at 891.087 kb on - strand, within AZOBR_RS26030at 891.215 kb on + strand, within AZOBR_RS26030at 891.216 kb on - strand, within AZOBR_RS26030at 891.216 kb on - strand, within AZOBR_RS26030at 891.216 kb on - strand, within AZOBR_RS26030at 891.216 kb on - strand, within AZOBR_RS26030at 891.216 kb on - strand, within AZOBR_RS26030at 891.466 kb on + strand, within AZOBR_RS26030at 891.702 kb on + strand, within AZOBR_RS26030at 891.703 kb on - strand, within AZOBR_RS26030at 891.703 kb on - strand, within AZOBR_RS26030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
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888,465 + AZOBR_RS26015 0.83 +1.0
888,465 + AZOBR_RS26015 0.83 +1.6
888,466 - AZOBR_RS26015 0.83 +0.0
888,466 - AZOBR_RS26015 0.83 +0.5
888,490 + -0.3
888,529 - -1.9
888,529 - +0.4
888,596 + -0.9
888,596 + +0.2
888,596 + -2.0
888,597 - -3.1
888,597 - -1.6
888,637 + -0.9
888,637 + +0.1
888,638 - -0.7
888,638 - +0.4
888,696 + -0.2
888,696 + -1.2
888,751 - -1.4
888,777 + +0.4
888,777 + +0.9
888,778 - -0.1
888,784 - -1.0
888,805 + -0.2
888,944 - +0.5
889,425 + -0.9
889,425 + -0.5
889,426 - +0.2
889,426 - +0.2
889,443 + -1.3
889,444 - -0.2
889,444 - -0.5
889,723 - AZOBR_RS26025 0.23 -0.2
889,723 - AZOBR_RS26025 0.23 -2.4
889,938 + AZOBR_RS26025 0.40 +1.0
889,938 + AZOBR_RS26025 0.40 +1.6
889,939 - AZOBR_RS26025 0.40 +0.3
889,948 + AZOBR_RS26025 0.40 -3.0
889,948 + AZOBR_RS26025 0.40 +0.3
889,948 + AZOBR_RS26025 0.40 +1.0
889,948 + AZOBR_RS26025 0.40 -0.5
889,949 - -0.3
890,223 + AZOBR_RS26025 0.62 +0.3
890,223 + AZOBR_RS26025 0.62 +0.5
890,223 + AZOBR_RS26025 0.62 -0.0
890,644 - +0.2
890,788 - +0.6
890,812 + -0.1
890,826 - -0.2
890,828 + -3.3
890,893 + -0.8
890,894 - -0.3
890,973 - +0.1
891,086 + AZOBR_RS26030 0.13 -0.0
891,087 - AZOBR_RS26030 0.13 -0.5
891,087 - AZOBR_RS26030 0.13 -0.4
891,215 + AZOBR_RS26030 0.22 -1.0
891,216 - AZOBR_RS26030 0.22 +0.2
891,216 - AZOBR_RS26030 0.22 -0.2
891,216 - AZOBR_RS26030 0.22 +0.5
891,216 - AZOBR_RS26030 0.22 +0.4
891,216 - AZOBR_RS26030 0.22 +0.3
891,466 + AZOBR_RS26030 0.41 +0.7
891,702 + AZOBR_RS26030 0.59 +0.3
891,703 - AZOBR_RS26030 0.59 +0.6
891,703 - AZOBR_RS26030 0.59 +0.4

Or see this region's nucleotide sequence