Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16215

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16205 and AZOBR_RS16210 are separated by 163 nucleotidesAZOBR_RS16210 and AZOBR_RS16215 are separated by 112 nucleotidesAZOBR_RS16215 and AZOBR_RS16220 are separated by 166 nucleotides AZOBR_RS16205: AZOBR_RS16205 - hypothetical protein, at 385,020 to 385,910 _RS16205 AZOBR_RS16210: AZOBR_RS16210 - hypothetical protein, at 386,074 to 386,292 _RS16210 AZOBR_RS16215: AZOBR_RS16215 - aspartyl-tRNA synthetase, at 386,405 to 388,234 _RS16215 AZOBR_RS16220: AZOBR_RS16220 - ribonuclease D, at 388,401 to 389,567 _RS16220 Position (kb) 386 387 388 389Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 385.964 kb on + strandat 386.254 kb on + strand, within AZOBR_RS16210at 386.254 kb on + strand, within AZOBR_RS16210at 386.255 kb on - strand, within AZOBR_RS16210at 386.255 kb on - strand, within AZOBR_RS16210at 386.255 kb on - strand, within AZOBR_RS16210at 388.389 kb on + strandat 388.389 kb on + strandat 388.465 kb on - strandat 388.465 kb on - strandat 388.465 kb on - strandat 388.503 kb on + strandat 388.504 kb on - strandat 388.504 kb on - strandat 388.849 kb on - strand, within AZOBR_RS16220at 388.849 kb on - strand, within AZOBR_RS16220at 388.884 kb on + strand, within AZOBR_RS16220at 388.971 kb on + strand, within AZOBR_RS16220

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
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385,964 + -1.0
386,254 + AZOBR_RS16210 0.82 +0.9
386,254 + AZOBR_RS16210 0.82 +2.1
386,255 - AZOBR_RS16210 0.83 +0.6
386,255 - AZOBR_RS16210 0.83 +0.6
386,255 - AZOBR_RS16210 0.83 +0.0
388,389 + -0.1
388,389 + +0.7
388,465 - -0.9
388,465 - -0.7
388,465 - -1.0
388,503 + -0.6
388,504 - -3.2
388,504 - -0.3
388,849 - AZOBR_RS16220 0.38 -0.9
388,849 - AZOBR_RS16220 0.38 -0.8
388,884 + AZOBR_RS16220 0.41 +0.7
388,971 + AZOBR_RS16220 0.49 -6.0

Or see this region's nucleotide sequence