Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01385

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS01375 and AZOBR_RS01380 are separated by 461 nucleotidesAZOBR_RS01380 and AZOBR_RS01385 are separated by 227 nucleotidesAZOBR_RS01385 and AZOBR_RS01390 are separated by 298 nucleotides AZOBR_RS01375: AZOBR_RS01375 - hypothetical protein, at 285,173 to 285,685 _RS01375 AZOBR_RS01380: AZOBR_RS01380 - hypothetical protein, at 286,147 to 286,452 _RS01380 AZOBR_RS01385: AZOBR_RS01385 - polynucleotide phosphorylase, at 286,680 to 288,800 _RS01385 AZOBR_RS01390: AZOBR_RS01390 - 30S ribosomal protein S15, at 289,099 to 289,368 _RS01390 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -2 -1 0 1at 285.717 kb on - strandat 285.754 kb on + strandat 285.755 kb on - strandat 285.755 kb on - strandat 285.836 kb on + strandat 286.083 kb on - strandat 286.083 kb on - strandat 286.550 kb on + strandat 286.550 kb on + strandat 286.551 kb on - strandat 286.648 kb on + strandat 288.848 kb on - strandat 288.919 kb on - strandat 288.975 kb on - strandat 288.975 kb on - strandat 289.787 kb on + strandat 289.787 kb on + strandat 289.788 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
remove
285,717 - +0.2
285,754 + -2.6
285,755 - +0.2
285,755 - -1.5
285,836 + -1.6
286,083 - +0.6
286,083 - +0.4
286,550 + -0.3
286,550 + +0.2
286,551 - +1.4
286,648 + +0.0
288,848 - -2.1
288,919 - -1.9
288,975 - +1.4
288,975 - +0.8
289,787 + +0.2
289,787 + +0.6
289,788 - -1.2

Or see this region's nucleotide sequence