Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00920

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00915 and AZOBR_RS00920 are separated by 399 nucleotidesAZOBR_RS00920 and AZOBR_RS00925 are separated by 91 nucleotides AZOBR_RS00915: AZOBR_RS00915 - nuclease, at 182,346 to 183,182 _RS00915 AZOBR_RS00920: AZOBR_RS00920 - peptidase, at 183,582 to 184,904 _RS00920 AZOBR_RS00925: AZOBR_RS00925 - guanylate cyclase, at 184,996 to 186,921 _RS00925 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2 3at 183.428 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.655 kb on - strandat 183.766 kb on - strand, within AZOBR_RS00920at 183.766 kb on - strand, within AZOBR_RS00920at 183.771 kb on + strand, within AZOBR_RS00920at 183.771 kb on + strand, within AZOBR_RS00920at 183.772 kb on - strand, within AZOBR_RS00920at 183.772 kb on - strand, within AZOBR_RS00920at 183.772 kb on - strand, within AZOBR_RS00920at 184.032 kb on + strand, within AZOBR_RS00920at 184.032 kb on + strand, within AZOBR_RS00920at 184.032 kb on + strand, within AZOBR_RS00920at 184.033 kb on - strand, within AZOBR_RS00920at 184.105 kb on - strand, within AZOBR_RS00920at 184.105 kb on - strand, within AZOBR_RS00920at 184.245 kb on + strand, within AZOBR_RS00920at 184.272 kb on + strand, within AZOBR_RS00920at 184.273 kb on - strand, within AZOBR_RS00920at 184.359 kb on + strand, within AZOBR_RS00920at 184.359 kb on + strand, within AZOBR_RS00920at 184.360 kb on - strand, within AZOBR_RS00920at 184.360 kb on - strand, within AZOBR_RS00920at 184.464 kb on + strand, within AZOBR_RS00920at 184.464 kb on + strand, within AZOBR_RS00920at 184.465 kb on - strand, within AZOBR_RS00920at 184.600 kb on + strand, within AZOBR_RS00920at 184.600 kb on + strandat 184.624 kb on - strand, within AZOBR_RS00920at 184.731 kb on + strand, within AZOBR_RS00920at 184.790 kb on - strandat 184.935 kb on + strandat 184.984 kb on - strandat 185.647 kb on + strand, within AZOBR_RS00925at 185.647 kb on + strand, within AZOBR_RS00925at 185.647 kb on + strand, within AZOBR_RS00925at 185.648 kb on - strand, within AZOBR_RS00925at 185.648 kb on - strand, within AZOBR_RS00925at 185.648 kb on - strand, within AZOBR_RS00925at 185.648 kb on - strand, within AZOBR_RS00925at 185.710 kb on + strand, within AZOBR_RS00925at 185.710 kb on + strand, within AZOBR_RS00925at 185.711 kb on - strand, within AZOBR_RS00925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
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183,428 + -0.7
183,654 + +3.4
183,654 + +0.4
183,654 + +0.5
183,654 + -0.3
183,654 + -0.3
183,654 + -1.2
183,655 - +0.9
183,766 - AZOBR_RS00920 0.14 +0.4
183,766 - AZOBR_RS00920 0.14 +0.5
183,771 + AZOBR_RS00920 0.14 +1.8
183,771 + AZOBR_RS00920 0.14 +1.1
183,772 - AZOBR_RS00920 0.14 +1.6
183,772 - AZOBR_RS00920 0.14 +1.6
183,772 - AZOBR_RS00920 0.14 +3.3
184,032 + AZOBR_RS00920 0.34 +0.3
184,032 + AZOBR_RS00920 0.34 +0.1
184,032 + AZOBR_RS00920 0.34 +0.3
184,033 - AZOBR_RS00920 0.34 +1.0
184,105 - AZOBR_RS00920 0.40 +1.0
184,105 - AZOBR_RS00920 0.40 +0.7
184,245 + AZOBR_RS00920 0.50 -1.8
184,272 + AZOBR_RS00920 0.52 -1.3
184,273 - AZOBR_RS00920 0.52 +1.4
184,359 + AZOBR_RS00920 0.59 +0.1
184,359 + AZOBR_RS00920 0.59 +0.2
184,360 - AZOBR_RS00920 0.59 -0.0
184,360 - AZOBR_RS00920 0.59 +0.2
184,464 + AZOBR_RS00920 0.67 +1.5
184,464 + AZOBR_RS00920 0.67 +0.4
184,465 - AZOBR_RS00920 0.67 -1.1
184,600 + AZOBR_RS00920 0.77 +0.5
184,600 + +2.5
184,624 - AZOBR_RS00920 0.79 -2.1
184,731 + AZOBR_RS00920 0.87 +1.9
184,790 - -1.1
184,935 + +0.5
184,984 - +1.4
185,647 + AZOBR_RS00925 0.34 -0.3
185,647 + AZOBR_RS00925 0.34 -0.3
185,647 + AZOBR_RS00925 0.34 +1.2
185,648 - AZOBR_RS00925 0.34 -0.6
185,648 - AZOBR_RS00925 0.34 +0.1
185,648 - AZOBR_RS00925 0.34 -0.1
185,648 - AZOBR_RS00925 0.34 +0.7
185,710 + AZOBR_RS00925 0.37 -0.3
185,710 + AZOBR_RS00925 0.37 +0.5
185,711 - AZOBR_RS00925 0.37 +0.6

Or see this region's nucleotide sequence