Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00900

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00895 and AZOBR_RS00900 are separated by 122 nucleotidesAZOBR_RS00900 and AZOBR_RS00905 are separated by 21 nucleotidesAZOBR_RS00905 and AZOBR_RS00910 are separated by 179 nucleotides AZOBR_RS00895: AZOBR_RS00895 - phenylalanyl-tRNA synthetase subunit alpha, at 179,363 to 180,430 _RS00895 AZOBR_RS00900: AZOBR_RS00900 - 50S ribosomal protein L20, at 180,553 to 180,924 _RS00900 AZOBR_RS00905: AZOBR_RS00905 - 50S ribosomal protein L35, at 180,946 to 181,146 _RS00905 AZOBR_RS00910: AZOBR_RS00910 - proline iminopeptidase, at 181,326 to 182,276 _RS00910 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 180.466 kb on - strandat 181.321 kb on - strandat 181.333 kb on + strandat 181.334 kb on - strandat 181.484 kb on - strand, within AZOBR_RS00910at 181.576 kb on + strand, within AZOBR_RS00910at 181.576 kb on + strand, within AZOBR_RS00910at 181.577 kb on - strand, within AZOBR_RS00910at 181.675 kb on + strand, within AZOBR_RS00910at 181.741 kb on + strand, within AZOBR_RS00910at 181.742 kb on - strand, within AZOBR_RS00910at 181.742 kb on - strand, within AZOBR_RS00910at 181.828 kb on + strand, within AZOBR_RS00910

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
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180,466 - -0.0
181,321 - -0.4
181,333 + -1.0
181,334 - +1.3
181,484 - AZOBR_RS00910 0.17 +1.9
181,576 + AZOBR_RS00910 0.26 +0.6
181,576 + AZOBR_RS00910 0.26 +1.6
181,577 - AZOBR_RS00910 0.26 +1.6
181,675 + AZOBR_RS00910 0.37 +0.4
181,741 + AZOBR_RS00910 0.44 -2.4
181,742 - AZOBR_RS00910 0.44 +0.6
181,742 - AZOBR_RS00910 0.44 +2.0
181,828 + AZOBR_RS00910 0.53 +0.8

Or see this region's nucleotide sequence