Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01760 and AO353_01765 are separated by 274 nucleotides AO353_01765 and AO353_01770 are separated by 62 nucleotides AO353_01770 and AO353_01775 are separated by 83 nucleotides AO353_01775 and AO353_01780 are separated by 66 nucleotides
AO353_01760: AO353_01760 - 3-oxoacyl-ACP synthase, at 370,092 to 371,312
_01760
AO353_01765: AO353_01765 - peroxiredoxin, at 371,587 to 372,003
_01765
AO353_01770: AO353_01770 - pirin, at 372,066 to 372,953
_01770
AO353_01775: AO353_01775 - dienelactone hydrolase, at 373,037 to 373,765
_01775
AO353_01780: AO353_01780 - heat-shock protein Hsp90, at 373,832 to 375,736
_01780
Position (kb) 372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 371.310 kb on + strand at 371.310 kb on + strand at 371.311 kb on - strand at 371.378 kb on + strand at 371.378 kb on + strand at 371.379 kb on - strand at 371.379 kb on - strand at 371.386 kb on + strand at 371.386 kb on + strand at 371.387 kb on - strand at 371.387 kb on - strand at 371.387 kb on - strand at 371.387 kb on - strand at 371.387 kb on - strand at 371.425 kb on - strand at 371.442 kb on + strand at 371.443 kb on - strand at 371.443 kb on - strand at 371.443 kb on - strand at 371.443 kb on - strand at 371.443 kb on - strand at 371.443 kb on - strand at 371.529 kb on + strand at 371.529 kb on + strand at 371.529 kb on + strand at 371.529 kb on + strand at 371.530 kb on - strand at 371.530 kb on - strand at 371.530 kb on - strand at 371.530 kb on - strand at 371.530 kb on - strand at 371.530 kb on - strand at 371.530 kb on - strand at 371.531 kb on + strand at 371.531 kb on + strand at 371.531 kb on + strand at 371.531 kb on + strand at 371.531 kb on + strand at 371.532 kb on - strand at 371.532 kb on - strand at 371.532 kb on - strand at 371.544 kb on + strand at 371.544 kb on + strand at 371.545 kb on - strand at 371.545 kb on - strand at 371.545 kb on - strand at 371.545 kb on - strand at 371.545 kb on - strand at 371.567 kb on + strand at 371.716 kb on + strand, within AO353_01765 at 371.716 kb on + strand, within AO353_01765 at 371.717 kb on - strand, within AO353_01765 at 371.717 kb on - strand, within AO353_01765 at 371.764 kb on + strand, within AO353_01765 at 371.764 kb on + strand, within AO353_01765 at 371.765 kb on - strand, within AO353_01765 at 371.845 kb on + strand, within AO353_01765 at 371.845 kb on + strand, within AO353_01765 at 371.845 kb on + strand, within AO353_01765 at 371.845 kb on + strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.846 kb on - strand, within AO353_01765 at 371.880 kb on - strand, within AO353_01765 at 372.028 kb on - strand at 372.049 kb on - strand at 372.049 kb on - strand at 372.261 kb on + strand, within AO353_01770 at 372.261 kb on + strand, within AO353_01770 at 372.261 kb on + strand, within AO353_01770 at 372.262 kb on - strand, within AO353_01770 at 372.262 kb on - strand, within AO353_01770 at 372.262 kb on - strand, within AO353_01770 at 372.262 kb on - strand, within AO353_01770 at 372.468 kb on + strand, within AO353_01770 at 372.469 kb on - strand, within AO353_01770 at 372.588 kb on + strand, within AO353_01770 at 372.657 kb on + strand, within AO353_01770 at 372.658 kb on - strand, within AO353_01770 at 372.658 kb on - strand, within AO353_01770 at 372.658 kb on - strand, within AO353_01770 at 372.658 kb on - strand, within AO353_01770 at 372.715 kb on + strand, within AO353_01770 at 372.715 kb on + strand, within AO353_01770 at 372.716 kb on - strand, within AO353_01770 at 372.716 kb on - strand, within AO353_01770 at 372.716 kb on - strand, within AO353_01770 at 372.923 kb on + strand at 372.923 kb on + strand at 372.924 kb on - strand at 372.924 kb on - strand at 372.951 kb on + strand at 372.952 kb on - strand at 372.952 kb on - strand at 372.952 kb on - strand at 372.952 kb on - strand at 372.952 kb on - strand at 373.107 kb on + strand at 373.107 kb on + strand at 373.107 kb on + strand at 373.107 kb on + strand at 373.107 kb on + strand at 373.107 kb on + strand at 373.108 kb on - strand at 373.108 kb on - strand at 373.321 kb on + strand, within AO353_01775 at 373.423 kb on + strand, within AO353_01775 at 373.423 kb on + strand, within AO353_01775 at 373.423 kb on + strand, within AO353_01775 at 373.423 kb on + strand, within AO353_01775 at 373.563 kb on + strand, within AO353_01775 at 373.563 kb on + strand, within AO353_01775 at 373.564 kb on - strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.583 kb on + strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.584 kb on - strand, within AO353_01775 at 373.587 kb on + strand, within AO353_01775 at 373.587 kb on + strand, within AO353_01775 at 373.587 kb on + strand, within AO353_01775 at 373.588 kb on - strand, within AO353_01775 at 373.588 kb on - strand, within AO353_01775 at 373.588 kb on - strand, within AO353_01775 at 373.588 kb on - strand, within AO353_01775 at 373.588 kb on - strand, within AO353_01775 at 373.588 kb on - strand, within AO353_01775 at 373.713 kb on + strand at 373.713 kb on + strand at 373.713 kb on + strand at 373.714 kb on - strand at 373.734 kb on + strand at 373.734 kb on + strand at 373.753 kb on + strand at 373.753 kb on + strand at 373.753 kb on + strand at 373.754 kb on - strand at 373.754 kb on - strand at 373.754 kb on - strand at 373.754 kb on - strand at 373.754 kb on - strand at 373.822 kb on + strand at 373.822 kb on + strand at 373.875 kb on + strand at 373.875 kb on + strand at 373.875 kb on + strand at 373.875 kb on + strand at 373.876 kb on - strand at 373.876 kb on - strand at 373.876 kb on - strand at 373.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 371,310 + +1.3 371,310 + -1.0 371,311 - +0.3 371,378 + -0.4 371,378 + +0.1 371,379 - +0.3 371,379 - -0.3 371,386 + +0.9 371,386 + -2.0 371,387 - -0.6 371,387 - +2.3 371,387 - +0.1 371,387 - +2.1 371,387 - -0.2 371,425 - +0.1 371,442 + +1.0 371,443 - +0.8 371,443 - -1.3 371,443 - +0.1 371,443 - -1.1 371,443 - -0.9 371,443 - -0.5 371,529 + -1.2 371,529 + -0.4 371,529 + -2.5 371,529 + -0.5 371,530 - +0.6 371,530 - -1.4 371,530 - +0.5 371,530 - +1.1 371,530 - +0.8 371,530 - -0.6 371,530 - +1.1 371,531 + -0.1 371,531 + +1.1 371,531 + +0.1 371,531 + +0.2 371,531 + -0.2 371,532 - -0.6 371,532 - -1.2 371,532 - +0.8 371,544 + -0.3 371,544 + +1.3 371,545 - -0.4 371,545 - -0.6 371,545 - +0.4 371,545 - -0.3 371,545 - +0.9 371,567 + +0.3 371,716 + AO353_01765 0.31 -0.9 371,716 + AO353_01765 0.31 -0.2 371,717 - AO353_01765 0.31 +1.2 371,717 - AO353_01765 0.31 -0.6 371,764 + AO353_01765 0.42 +1.1 371,764 + AO353_01765 0.42 -0.2 371,765 - AO353_01765 0.43 +0.1 371,845 + AO353_01765 0.62 +0.8 371,845 + AO353_01765 0.62 +0.4 371,845 + AO353_01765 0.62 +1.2 371,845 + AO353_01765 0.62 -0.5 371,846 - AO353_01765 0.62 -0.7 371,846 - AO353_01765 0.62 -2.7 371,846 - AO353_01765 0.62 -0.0 371,846 - AO353_01765 0.62 +1.0 371,846 - AO353_01765 0.62 +0.4 371,846 - AO353_01765 0.62 -1.2 371,846 - AO353_01765 0.62 +0.8 371,846 - AO353_01765 0.62 +0.2 371,880 - AO353_01765 0.70 -0.6 372,028 - -1.1 372,049 - +0.6 372,049 - +0.3 372,261 + AO353_01770 0.22 -0.9 372,261 + AO353_01770 0.22 -2.1 372,261 + AO353_01770 0.22 +0.3 372,262 - AO353_01770 0.22 -0.6 372,262 - AO353_01770 0.22 -1.1 372,262 - AO353_01770 0.22 -0.4 372,262 - AO353_01770 0.22 +0.1 372,468 + AO353_01770 0.45 +0.3 372,469 - AO353_01770 0.45 -1.4 372,588 + AO353_01770 0.59 -0.6 372,657 + AO353_01770 0.67 -0.9 372,658 - AO353_01770 0.67 -1.2 372,658 - AO353_01770 0.67 +0.1 372,658 - AO353_01770 0.67 -1.6 372,658 - AO353_01770 0.67 -1.1 372,715 + AO353_01770 0.73 -0.3 372,715 + AO353_01770 0.73 +1.0 372,716 - AO353_01770 0.73 -1.0 372,716 - AO353_01770 0.73 -1.7 372,716 - AO353_01770 0.73 -0.0 372,923 + +1.2 372,923 + -0.3 372,924 - +0.6 372,924 - -0.1 372,951 + +0.6 372,952 - +0.1 372,952 - -0.1 372,952 - -0.5 372,952 - -0.9 372,952 - +1.5 373,107 + +1.5 373,107 + -0.4 373,107 + +0.3 373,107 + -0.4 373,107 + -0.4 373,107 + -0.3 373,108 - +1.7 373,108 - +0.1 373,321 + AO353_01775 0.39 -2.9 373,423 + AO353_01775 0.53 +0.8 373,423 + AO353_01775 0.53 -0.6 373,423 + AO353_01775 0.53 +0.5 373,423 + AO353_01775 0.53 -0.2 373,563 + AO353_01775 0.72 +1.6 373,563 + AO353_01775 0.72 +0.1 373,564 - AO353_01775 0.72 -0.1 373,583 + AO353_01775 0.75 +0.5 373,583 + AO353_01775 0.75 -1.4 373,583 + AO353_01775 0.75 -1.6 373,583 + AO353_01775 0.75 -0.2 373,583 + AO353_01775 0.75 -1.3 373,583 + AO353_01775 0.75 -0.4 373,583 + AO353_01775 0.75 -1.0 373,583 + AO353_01775 0.75 -0.2 373,583 + AO353_01775 0.75 -0.1 373,583 + AO353_01775 0.75 +0.4 373,583 + AO353_01775 0.75 -0.4 373,584 - AO353_01775 0.75 +0.7 373,584 - AO353_01775 0.75 -0.4 373,584 - AO353_01775 0.75 +2.1 373,584 - AO353_01775 0.75 -0.7 373,584 - AO353_01775 0.75 -0.9 373,584 - AO353_01775 0.75 -3.0 373,584 - AO353_01775 0.75 +0.7 373,584 - AO353_01775 0.75 -0.7 373,584 - AO353_01775 0.75 -0.0 373,584 - AO353_01775 0.75 -0.6 373,584 - AO353_01775 0.75 -0.1 373,584 - AO353_01775 0.75 +0.9 373,584 - AO353_01775 0.75 -1.8 373,584 - AO353_01775 0.75 -1.4 373,584 - AO353_01775 0.75 +0.5 373,584 - AO353_01775 0.75 -1.4 373,584 - AO353_01775 0.75 +0.8 373,584 - AO353_01775 0.75 +0.1 373,584 - AO353_01775 0.75 +0.9 373,584 - AO353_01775 0.75 -2.3 373,584 - AO353_01775 0.75 +0.8 373,584 - AO353_01775 0.75 +0.2 373,587 + AO353_01775 0.75 +0.5 373,587 + AO353_01775 0.75 -0.1 373,587 + AO353_01775 0.75 +0.3 373,588 - AO353_01775 0.76 +0.0 373,588 - AO353_01775 0.76 -0.6 373,588 - AO353_01775 0.76 +0.4 373,588 - AO353_01775 0.76 -0.1 373,588 - AO353_01775 0.76 -0.2 373,588 - AO353_01775 0.76 -0.4 373,713 + -0.3 373,713 + -0.0 373,713 + +0.2 373,714 - +0.9 373,734 + +0.8 373,734 + -1.3 373,753 + -1.1 373,753 + -0.5 373,753 + +1.0 373,754 - -0.4 373,754 - -0.8 373,754 - +0.3 373,754 - +0.2 373,754 - +1.8 373,822 + -0.2 373,822 + -0.2 373,875 + +0.9 373,875 + -0.9 373,875 + +1.2 373,875 + +1.0 373,876 - +0.1 373,876 - -0.8 373,876 - +1.1 373,876 - -0.2
Or see this region's nucleotide sequence