Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3669

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3668 and Shewana3_3669 are separated by 213 nucleotidesShewana3_3669 and rpmE are separated by 511 nucleotidesrpmE and Shewana3_3671 are separated by 165 nucleotides Shewana3_3668: Shewana3_3668 - regulatory protein CsrD (RefSeq), at 4,404,484 to 4,406,394 _3668 Shewana3_3669: Shewana3_3669 - malic enzyme, NAD-binding (RefSeq), at 4,406,608 to 4,407,852 _3669 Shewana3_3670: rpmE - 50S ribosomal protein L31 (RefSeq), at 4,408,364 to 4,408,576 rpmE Shewana3_3671: Shewana3_3671 - response regulator receiver protein (RefSeq), at 4,408,742 to 4,409,917 _3671 Position (kb) 4406 4407 4408Strain fitness (log2 ratio) -1 0 1at 4405.624 kb on + strand, within Shewana3_3668at 4405.767 kb on + strand, within Shewana3_3668at 4405.767 kb on + strand, within Shewana3_3668at 4405.775 kb on - strand, within Shewana3_3668at 4405.775 kb on - strand, within Shewana3_3668at 4405.775 kb on - strand, within Shewana3_3668at 4405.847 kb on + strand, within Shewana3_3668at 4406.078 kb on + strand, within Shewana3_3668at 4406.078 kb on + strand, within Shewana3_3668at 4406.086 kb on - strand, within Shewana3_3668at 4406.118 kb on - strand, within Shewana3_3668at 4406.197 kb on + strand, within Shewana3_3668at 4406.509 kb on - strandat 4406.583 kb on + strandat 4406.592 kb on - strandat 4406.592 kb on - strandat 4406.623 kb on + strandat 4406.704 kb on + strandat 4406.820 kb on - strand, within Shewana3_3669at 4406.870 kb on - strand, within Shewana3_3669at 4406.870 kb on - strand, within Shewana3_3669at 4406.870 kb on - strand, within Shewana3_3669at 4406.870 kb on - strand, within Shewana3_3669at 4406.870 kb on - strand, within Shewana3_3669at 4407.203 kb on + strand, within Shewana3_3669at 4407.296 kb on + strand, within Shewana3_3669at 4407.664 kb on + strand, within Shewana3_3669at 4407.850 kb on + strandat 4407.890 kb on - strandat 4407.928 kb on + strandat 4407.946 kb on - strandat 4407.951 kb on + strandat 4407.951 kb on + strandat 4408.099 kb on + strandat 4408.823 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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4,405,624 + Shewana3_3668 0.60 -0.5
4,405,767 + Shewana3_3668 0.67 -0.3
4,405,767 + Shewana3_3668 0.67 -0.9
4,405,775 - Shewana3_3668 0.68 +0.4
4,405,775 - Shewana3_3668 0.68 -0.1
4,405,775 - Shewana3_3668 0.68 +0.0
4,405,847 + Shewana3_3668 0.71 -0.6
4,406,078 + Shewana3_3668 0.83 -0.4
4,406,078 + Shewana3_3668 0.83 +0.1
4,406,086 - Shewana3_3668 0.84 -1.3
4,406,118 - Shewana3_3668 0.86 -0.0
4,406,197 + Shewana3_3668 0.90 +0.2
4,406,509 - -0.1
4,406,583 + -0.2
4,406,592 - -0.1
4,406,592 - -0.1
4,406,623 + +0.2
4,406,704 + +0.3
4,406,820 - Shewana3_3669 0.17 +0.4
4,406,870 - Shewana3_3669 0.21 +0.5
4,406,870 - Shewana3_3669 0.21 -0.2
4,406,870 - Shewana3_3669 0.21 +0.6
4,406,870 - Shewana3_3669 0.21 +0.2
4,406,870 - Shewana3_3669 0.21 -0.3
4,407,203 + Shewana3_3669 0.48 +0.4
4,407,296 + Shewana3_3669 0.55 +0.2
4,407,664 + Shewana3_3669 0.85 +1.0
4,407,850 + +0.7
4,407,890 - +0.4
4,407,928 + -0.1
4,407,946 - +0.3
4,407,951 + +0.4
4,407,951 + +0.4
4,408,099 + -0.3
4,408,823 + -0.4

Or see this region's nucleotide sequence