Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2906

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2905 and Shewana3_2906 are separated by 269 nucleotidesShewana3_2906 and Shewana3_2907 are separated by 10 nucleotides Shewana3_2905: Shewana3_2905 - FAD linked oxidase domain-containing protein (RefSeq), at 3,476,042 to 3,478,846 _2905 Shewana3_2906: Shewana3_2906 - hypothetical protein (RefSeq), at 3,479,116 to 3,479,892 _2906 Shewana3_2907: Shewana3_2907 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,479,903 to 3,481,297 _2907 Position (kb) 3479 3480Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3478.163 kb on + strand, within Shewana3_2905at 3478.199 kb on - strand, within Shewana3_2905at 3478.260 kb on - strand, within Shewana3_2905at 3478.437 kb on - strand, within Shewana3_2905at 3478.504 kb on + strand, within Shewana3_2905at 3478.593 kb on - strandat 3478.635 kb on - strandat 3478.815 kb on - strandat 3478.862 kb on + strandat 3479.114 kb on - strandat 3479.318 kb on + strand, within Shewana3_2906at 3479.385 kb on + strand, within Shewana3_2906at 3479.421 kb on + strand, within Shewana3_2906at 3479.567 kb on + strand, within Shewana3_2906at 3479.616 kb on + strand, within Shewana3_2906at 3479.624 kb on - strand, within Shewana3_2906at 3479.660 kb on + strand, within Shewana3_2906at 3479.749 kb on + strand, within Shewana3_2906at 3479.880 kb on - strandat 3479.882 kb on - strandat 3479.983 kb on - strandat 3480.006 kb on + strandat 3480.111 kb on + strand, within Shewana3_2907at 3480.116 kb on + strand, within Shewana3_2907at 3480.181 kb on + strand, within Shewana3_2907at 3480.250 kb on + strand, within Shewana3_2907at 3480.258 kb on - strand, within Shewana3_2907at 3480.690 kb on + strand, within Shewana3_2907at 3480.690 kb on + strand, within Shewana3_2907at 3480.693 kb on - strand, within Shewana3_2907at 3480.873 kb on - strand, within Shewana3_2907at 3480.883 kb on - strand, within Shewana3_2907

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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3,478,163 + Shewana3_2905 0.76 -1.4
3,478,199 - Shewana3_2905 0.77 -2.2
3,478,260 - Shewana3_2905 0.79 -1.7
3,478,437 - Shewana3_2905 0.85 -2.2
3,478,504 + Shewana3_2905 0.88 -0.8
3,478,593 - -1.8
3,478,635 - -1.0
3,478,815 - -2.5
3,478,862 + -0.0
3,479,114 - -4.5
3,479,318 + Shewana3_2906 0.26 -4.2
3,479,385 + Shewana3_2906 0.35 -3.8
3,479,421 + Shewana3_2906 0.39 -3.9
3,479,567 + Shewana3_2906 0.58 -3.7
3,479,616 + Shewana3_2906 0.64 -3.8
3,479,624 - Shewana3_2906 0.65 -3.6
3,479,660 + Shewana3_2906 0.70 -3.9
3,479,749 + Shewana3_2906 0.81 -4.8
3,479,880 - -4.1
3,479,882 - -4.5
3,479,983 - -5.3
3,480,006 + -3.8
3,480,111 + Shewana3_2907 0.15 -3.4
3,480,116 + Shewana3_2907 0.15 -3.9
3,480,181 + Shewana3_2907 0.20 -5.5
3,480,250 + Shewana3_2907 0.25 -3.4
3,480,258 - Shewana3_2907 0.25 -5.2
3,480,690 + Shewana3_2907 0.56 -3.7
3,480,690 + Shewana3_2907 0.56 -5.2
3,480,693 - Shewana3_2907 0.57 -1.9
3,480,873 - Shewana3_2907 0.70 -4.1
3,480,883 - Shewana3_2907 0.70 -4.1

Or see this region's nucleotide sequence