Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1573 and Shewana3_1574 are separated by 712 nucleotides Shewana3_1574 and Shewana3_1575 are separated by 11 nucleotides Shewana3_1575 and Shewana3_1576 are separated by 162 nucleotides
Shewana3_1573: Shewana3_1573 - DSBA oxidoreductase (RefSeq), at 1,841,013 to 1,841,666
_1573
Shewana3_1574: Shewana3_1574 - hypothetical protein (RefSeq), at 1,842,379 to 1,842,645
_1574
Shewana3_1575: Shewana3_1575 - Na+/solute symporter (RefSeq), at 1,842,657 to 1,844,393
_1575
Shewana3_1576: Shewana3_1576 - cyclic nucleotide-binding protein (RefSeq), at 1,844,556 to 1,846,418
_1576
Position (kb)
1842
1843
1844
1845 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1841.682 kb on + strand at 1841.682 kb on + strand at 1841.682 kb on + strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1842.196 kb on - strand at 1842.329 kb on - strand at 1842.363 kb on + strand at 1842.402 kb on + strand at 1842.639 kb on + strand at 1842.677 kb on - strand at 1842.752 kb on + strand at 1842.780 kb on - strand at 1842.807 kb on + strand at 1842.865 kb on + strand, within Shewana3_1575 at 1842.913 kb on + strand, within Shewana3_1575 at 1842.923 kb on + strand, within Shewana3_1575 at 1842.923 kb on + strand, within Shewana3_1575 at 1843.037 kb on - strand, within Shewana3_1575 at 1843.071 kb on - strand, within Shewana3_1575 at 1843.194 kb on + strand, within Shewana3_1575 at 1843.194 kb on + strand, within Shewana3_1575 at 1843.589 kb on + strand, within Shewana3_1575 at 1843.820 kb on + strand, within Shewana3_1575 at 1843.964 kb on - strand, within Shewana3_1575 at 1844.009 kb on + strand, within Shewana3_1575 at 1844.271 kb on + strand at 1844.410 kb on - strand at 1845.006 kb on - strand, within Shewana3_1576 at 1845.016 kb on - strand, within Shewana3_1576 at 1845.379 kb on + strand, within Shewana3_1576
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 1,841,682 + +0.0 1,841,682 + -0.4 1,841,682 + -0.0 1,841,690 - +0.1 1,841,690 - -0.3 1,841,690 - +0.7 1,841,690 - +0.4 1,842,196 - -0.5 1,842,329 - +0.9 1,842,363 + -2.1 1,842,402 + -2.1 1,842,639 + -1.6 1,842,677 - -2.2 1,842,752 + -2.8 1,842,780 - -0.9 1,842,807 + -2.0 1,842,865 + Shewana3_1575 0.12 -0.9 1,842,913 + Shewana3_1575 0.15 -1.4 1,842,923 + Shewana3_1575 0.15 -2.4 1,842,923 + Shewana3_1575 0.15 -2.0 1,843,037 - Shewana3_1575 0.22 -1.2 1,843,071 - Shewana3_1575 0.24 -2.1 1,843,194 + Shewana3_1575 0.31 -2.2 1,843,194 + Shewana3_1575 0.31 -1.5 1,843,589 + Shewana3_1575 0.54 -1.9 1,843,820 + Shewana3_1575 0.67 -2.3 1,843,964 - Shewana3_1575 0.75 -2.5 1,844,009 + Shewana3_1575 0.78 -2.1 1,844,271 + -3.9 1,844,410 - -0.8 1,845,006 - Shewana3_1576 0.24 -0.7 1,845,016 - Shewana3_1576 0.25 +0.2 1,845,379 + Shewana3_1576 0.44 -0.1
Or see this region's nucleotide sequence