Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0583 and Shewana3_0584 are separated by 90 nucleotides Shewana3_0584 and Shewana3_0585 are separated by 23 nucleotides Shewana3_0585 and Shewana3_0586 are separated by 15 nucleotides
Shewana3_0583: Shewana3_0583 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 683,607 to 684,539
_0583
Shewana3_0584: Shewana3_0584 - hypothetical protein (RefSeq), at 684,630 to 684,965
_0584
Shewana3_0585: Shewana3_0585 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 684,989 to 685,711
_0585
Shewana3_0586: Shewana3_0586 - MscS mechanosensitive ion channel (RefSeq), at 685,727 to 688,930
_0586
Position (kb) 684
685 Strain fitness (log2 ratio) -1
0
1 at 683.944 kb on - strand, within Shewana3_0583 at 683.986 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.255 kb on + strand, within Shewana3_0583 at 684.263 kb on - strand, within Shewana3_0583 at 684.455 kb on + strand at 684.455 kb on + strand at 684.455 kb on + strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.772 kb on - strand, within Shewana3_0584 at 684.772 kb on - strand, within Shewana3_0584 at 684.789 kb on - strand, within Shewana3_0584 at 684.813 kb on + strand, within Shewana3_0584 at 684.968 kb on - strand at 685.085 kb on - strand, within Shewana3_0585 at 685.087 kb on + strand, within Shewana3_0585 at 685.093 kb on - strand, within Shewana3_0585 at 685.130 kb on - strand, within Shewana3_0585 at 685.143 kb on + strand, within Shewana3_0585 at 685.201 kb on + strand, within Shewana3_0585 at 685.401 kb on - strand, within Shewana3_0585 at 685.606 kb on - strand, within Shewana3_0585 at 685.628 kb on + strand, within Shewana3_0585 at 685.649 kb on - strand at 685.879 kb on + strand at 685.889 kb on + strand at 685.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 683,944 - Shewana3_0583 0.36 -1.2 683,986 - Shewana3_0583 0.41 +0.2 684,083 - Shewana3_0583 0.51 +0.7 684,083 - Shewana3_0583 0.51 +0.3 684,255 + Shewana3_0583 0.69 -0.1 684,263 - Shewana3_0583 0.70 -0.6 684,455 + +0.3 684,455 + -0.1 684,455 + +0.2 684,463 - +0.1 684,463 - -0.1 684,463 - +0.1 684,463 - +0.2 684,772 - Shewana3_0584 0.42 -1.3 684,772 - Shewana3_0584 0.42 -1.6 684,789 - Shewana3_0584 0.47 -0.3 684,813 + Shewana3_0584 0.54 -0.1 684,968 - -0.2 685,085 - Shewana3_0585 0.13 -0.5 685,087 + Shewana3_0585 0.14 -0.4 685,093 - Shewana3_0585 0.14 -0.3 685,130 - Shewana3_0585 0.20 -0.5 685,143 + Shewana3_0585 0.21 -0.3 685,201 + Shewana3_0585 0.29 +0.0 685,401 - Shewana3_0585 0.57 -0.6 685,606 - Shewana3_0585 0.85 -0.3 685,628 + Shewana3_0585 0.88 +0.0 685,649 - +0.4 685,879 + +0.3 685,889 + -0.8 685,950 + -0.8
Or see this region's nucleotide sequence