Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0429

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0428 and Shewana3_0429 are separated by 140 nucleotidesShewana3_0429 and Shewana3_0430 are separated by 230 nucleotides Shewana3_0428: Shewana3_0428 - dihydrolipoamide dehydrogenase (RefSeq), at 490,091 to 491,518 _0428 Shewana3_0429: Shewana3_0429 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 491,659 to 496,122 _0429 Shewana3_0430: Shewana3_0430 - patatin (RefSeq), at 496,353 to 498,572 _0430 Position (kb) 491 492 493 494 495 496 497Strain fitness (log2 ratio) -1 0 1 2at 491.811 kb on - strandat 491.896 kb on + strandat 491.904 kb on - strandat 491.904 kb on - strandat 492.015 kb on + strandat 492.301 kb on - strand, within Shewana3_0429at 492.376 kb on - strand, within Shewana3_0429at 492.423 kb on - strand, within Shewana3_0429at 492.435 kb on + strand, within Shewana3_0429at 492.535 kb on + strand, within Shewana3_0429at 492.713 kb on - strand, within Shewana3_0429at 492.794 kb on + strand, within Shewana3_0429at 492.794 kb on + strand, within Shewana3_0429at 492.825 kb on - strand, within Shewana3_0429at 492.935 kb on + strand, within Shewana3_0429at 492.937 kb on + strand, within Shewana3_0429at 492.937 kb on + strand, within Shewana3_0429at 493.234 kb on + strand, within Shewana3_0429at 493.306 kb on - strand, within Shewana3_0429at 493.329 kb on + strand, within Shewana3_0429at 493.443 kb on - strand, within Shewana3_0429at 493.552 kb on - strand, within Shewana3_0429at 493.565 kb on + strand, within Shewana3_0429at 493.574 kb on - strand, within Shewana3_0429at 493.701 kb on + strand, within Shewana3_0429at 493.701 kb on + strand, within Shewana3_0429at 493.829 kb on - strand, within Shewana3_0429at 493.912 kb on + strand, within Shewana3_0429at 493.926 kb on - strand, within Shewana3_0429at 493.967 kb on + strand, within Shewana3_0429at 494.141 kb on - strand, within Shewana3_0429at 494.146 kb on - strand, within Shewana3_0429at 494.210 kb on + strand, within Shewana3_0429at 494.238 kb on + strand, within Shewana3_0429at 494.241 kb on - strand, within Shewana3_0429at 494.327 kb on + strand, within Shewana3_0429at 494.340 kb on - strand, within Shewana3_0429at 494.342 kb on + strand, within Shewana3_0429at 494.342 kb on + strand, within Shewana3_0429at 494.342 kb on + strand, within Shewana3_0429at 494.350 kb on - strand, within Shewana3_0429at 494.420 kb on + strand, within Shewana3_0429at 494.428 kb on - strand, within Shewana3_0429at 494.473 kb on + strand, within Shewana3_0429at 494.566 kb on - strand, within Shewana3_0429at 494.607 kb on + strand, within Shewana3_0429at 494.708 kb on - strand, within Shewana3_0429at 494.751 kb on - strand, within Shewana3_0429at 494.884 kb on - strand, within Shewana3_0429at 494.897 kb on + strand, within Shewana3_0429at 494.897 kb on - strand, within Shewana3_0429at 494.911 kb on + strand, within Shewana3_0429at 494.948 kb on + strand, within Shewana3_0429at 494.975 kb on + strand, within Shewana3_0429at 494.986 kb on + strand, within Shewana3_0429at 495.238 kb on - strand, within Shewana3_0429at 495.267 kb on + strand, within Shewana3_0429at 495.280 kb on + strand, within Shewana3_0429at 495.325 kb on + strand, within Shewana3_0429at 495.325 kb on + strand, within Shewana3_0429at 495.325 kb on + strand, within Shewana3_0429at 495.331 kb on + strand, within Shewana3_0429at 495.331 kb on + strand, within Shewana3_0429at 495.371 kb on - strand, within Shewana3_0429at 495.371 kb on - strand, within Shewana3_0429at 495.385 kb on - strand, within Shewana3_0429at 495.385 kb on - strand, within Shewana3_0429at 495.386 kb on + strand, within Shewana3_0429at 495.481 kb on + strand, within Shewana3_0429at 495.489 kb on - strand, within Shewana3_0429at 495.534 kb on + strand, within Shewana3_0429at 495.608 kb on + strand, within Shewana3_0429at 495.711 kb on - strandat 495.816 kb on + strandat 496.003 kb on - strandat 496.017 kb on - strandat 496.029 kb on + strandat 496.117 kb on + strandat 496.117 kb on - strandat 496.429 kb on - strandat 496.429 kb on - strandat 496.587 kb on + strand, within Shewana3_0430at 496.824 kb on + strand, within Shewana3_0430at 496.914 kb on + strand, within Shewana3_0430at 496.933 kb on - strand, within Shewana3_0430at 496.996 kb on - strand, within Shewana3_0430at 497.006 kb on + strand, within Shewana3_0430at 497.006 kb on + strand, within Shewana3_0430at 497.006 kb on + strand, within Shewana3_0430at 497.073 kb on + strand, within Shewana3_0430

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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491,811 - +0.1
491,896 + +0.3
491,904 - -1.1
491,904 - +0.2
492,015 + +0.2
492,301 - Shewana3_0429 0.14 +0.2
492,376 - Shewana3_0429 0.16 +0.4
492,423 - Shewana3_0429 0.17 -0.1
492,435 + Shewana3_0429 0.17 +0.2
492,535 + Shewana3_0429 0.20 -0.3
492,713 - Shewana3_0429 0.24 -0.4
492,794 + Shewana3_0429 0.25 +0.4
492,794 + Shewana3_0429 0.25 -0.1
492,825 - Shewana3_0429 0.26 +0.0
492,935 + Shewana3_0429 0.29 +0.8
492,937 + Shewana3_0429 0.29 +0.3
492,937 + Shewana3_0429 0.29 -1.3
493,234 + Shewana3_0429 0.35 +0.2
493,306 - Shewana3_0429 0.37 +0.1
493,329 + Shewana3_0429 0.37 +0.0
493,443 - Shewana3_0429 0.40 -0.2
493,552 - Shewana3_0429 0.42 -0.3
493,565 + Shewana3_0429 0.43 -0.2
493,574 - Shewana3_0429 0.43 -0.1
493,701 + Shewana3_0429 0.46 -0.2
493,701 + Shewana3_0429 0.46 +0.4
493,829 - Shewana3_0429 0.49 -0.3
493,912 + Shewana3_0429 0.50 -1.1
493,926 - Shewana3_0429 0.51 -0.5
493,967 + Shewana3_0429 0.52 +0.2
494,141 - Shewana3_0429 0.56 -1.3
494,146 - Shewana3_0429 0.56 -0.1
494,210 + Shewana3_0429 0.57 -0.3
494,238 + Shewana3_0429 0.58 -0.1
494,241 - Shewana3_0429 0.58 +0.4
494,327 + Shewana3_0429 0.60 +0.6
494,340 - Shewana3_0429 0.60 +0.4
494,342 + Shewana3_0429 0.60 +0.4
494,342 + Shewana3_0429 0.60 -0.2
494,342 + Shewana3_0429 0.60 +0.2
494,350 - Shewana3_0429 0.60 +1.2
494,420 + Shewana3_0429 0.62 +0.2
494,428 - Shewana3_0429 0.62 +0.7
494,473 + Shewana3_0429 0.63 -0.4
494,566 - Shewana3_0429 0.65 +0.1
494,607 + Shewana3_0429 0.66 +0.1
494,708 - Shewana3_0429 0.68 +0.2
494,751 - Shewana3_0429 0.69 -0.1
494,884 - Shewana3_0429 0.72 +0.3
494,897 + Shewana3_0429 0.73 +0.7
494,897 - Shewana3_0429 0.73 +0.1
494,911 + Shewana3_0429 0.73 +0.1
494,948 + Shewana3_0429 0.74 -0.3
494,975 + Shewana3_0429 0.74 -0.5
494,986 + Shewana3_0429 0.75 +0.6
495,238 - Shewana3_0429 0.80 +0.6
495,267 + Shewana3_0429 0.81 -0.2
495,280 + Shewana3_0429 0.81 -0.1
495,325 + Shewana3_0429 0.82 -0.3
495,325 + Shewana3_0429 0.82 +0.0
495,325 + Shewana3_0429 0.82 +0.2
495,331 + Shewana3_0429 0.82 +0.6
495,331 + Shewana3_0429 0.82 +0.1
495,371 - Shewana3_0429 0.83 -1.7
495,371 - Shewana3_0429 0.83 +0.4
495,385 - Shewana3_0429 0.83 +1.7
495,385 - Shewana3_0429 0.83 -0.2
495,386 + Shewana3_0429 0.83 +0.0
495,481 + Shewana3_0429 0.86 -0.2
495,489 - Shewana3_0429 0.86 +0.7
495,534 + Shewana3_0429 0.87 -0.4
495,608 + Shewana3_0429 0.88 +0.3
495,711 - +0.5
495,816 + +0.4
496,003 - +0.1
496,017 - -0.8
496,029 + -0.9
496,117 + -0.6
496,117 - -0.6
496,429 - +0.2
496,429 - +0.7
496,587 + Shewana3_0430 0.11 +0.9
496,824 + Shewana3_0430 0.21 -0.4
496,914 + Shewana3_0430 0.25 +0.7
496,933 - Shewana3_0430 0.26 +0.2
496,996 - Shewana3_0430 0.29 -1.5
497,006 + Shewana3_0430 0.29 -0.5
497,006 + Shewana3_0430 0.29 +1.2
497,006 + Shewana3_0430 0.29 +2.2
497,073 + Shewana3_0430 0.32 +0.9

Or see this region's nucleotide sequence