Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_840 and Pf1N1B4_841 are separated by 231 nucleotides Pf1N1B4_841 and Pf1N1B4_842 are separated by 184 nucleotides
Pf1N1B4_840 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain, at 967,990 to 969,459
_840
Pf1N1B4_841 - ABC-type sugar transport systems, ATPase components, at 969,691 to 970,239
_841
Pf1N1B4_842 - putative membrane protein, at 970,424 to 971,191
_842
Position (kb) 969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 969.528 kb on - strand at 969.621 kb on + strand at 969.668 kb on + strand at 969.668 kb on + strand at 969.673 kb on + strand at 969.674 kb on - strand at 969.692 kb on + strand at 969.693 kb on - strand at 969.693 kb on - strand at 969.783 kb on + strand, within Pf1N1B4_841 at 969.784 kb on - strand, within Pf1N1B4_841 at 969.784 kb on - strand at 969.885 kb on + strand, within Pf1N1B4_841 at 969.989 kb on + strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 969.990 kb on - strand, within Pf1N1B4_841 at 970.193 kb on - strand at 970.251 kb on - strand at 970.329 kb on + strand at 970.329 kb on + strand at 970.330 kb on - strand at 970.330 kb on - strand at 970.405 kb on - strand at 970.405 kb on - strand at 970.437 kb on + strand at 970.438 kb on - strand at 970.438 kb on - strand at 970.599 kb on + strand, within Pf1N1B4_842 at 970.599 kb on + strand at 970.600 kb on - strand, within Pf1N1B4_842 at 970.704 kb on + strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.705 kb on - strand, within Pf1N1B4_842 at 970.713 kb on + strand, within Pf1N1B4_842 at 970.714 kb on - strand, within Pf1N1B4_842 at 970.715 kb on + strand, within Pf1N1B4_842 at 970.716 kb on - strand, within Pf1N1B4_842 at 970.811 kb on - strand, within Pf1N1B4_842 at 970.811 kb on - strand, within Pf1N1B4_842 at 970.824 kb on + strand, within Pf1N1B4_842 at 971.102 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand, within Pf1N1B4_842 at 971.109 kb on + strand at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.110 kb on - strand, within Pf1N1B4_842 at 971.174 kb on + strand at 971.175 kb on - strand at 971.175 kb on - strand at 971.208 kb on + strand at 971.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 969,528 - -0.9 969,621 + +1.2 969,668 + -0.2 969,668 + +1.6 969,673 + +0.6 969,674 - +0.1 969,692 + +0.6 969,693 - +0.1 969,693 - +0.6 969,783 + Pf1N1B4_841 0.17 -0.4 969,784 - Pf1N1B4_841 0.17 -0.6 969,784 - +0.6 969,885 + Pf1N1B4_841 0.35 +2.2 969,989 + Pf1N1B4_841 0.54 +0.3 969,990 - Pf1N1B4_841 0.54 -0.0 969,990 - Pf1N1B4_841 0.54 -1.5 969,990 - Pf1N1B4_841 0.54 -1.9 969,990 - Pf1N1B4_841 0.54 -0.5 970,193 - +1.6 970,251 - +0.6 970,329 + +0.6 970,329 + +1.6 970,330 - -0.6 970,330 - +1.4 970,405 - +1.0 970,405 - +2.1 970,437 + +0.6 970,438 - -0.4 970,438 - -0.7 970,599 + Pf1N1B4_842 0.23 +0.1 970,599 + -0.9 970,600 - Pf1N1B4_842 0.23 +1.4 970,704 + Pf1N1B4_842 0.36 -0.2 970,705 - Pf1N1B4_842 0.37 +1.3 970,705 - Pf1N1B4_842 0.37 -0.3 970,705 - Pf1N1B4_842 0.37 +0.4 970,705 - Pf1N1B4_842 0.37 +1.6 970,705 - Pf1N1B4_842 0.37 +3.0 970,713 + Pf1N1B4_842 0.38 +0.9 970,714 - Pf1N1B4_842 0.38 -0.9 970,715 + Pf1N1B4_842 0.38 -1.9 970,716 - Pf1N1B4_842 0.38 -0.6 970,811 - Pf1N1B4_842 0.50 -1.9 970,811 - Pf1N1B4_842 0.50 +0.5 970,824 + Pf1N1B4_842 0.52 +0.3 971,102 + Pf1N1B4_842 0.88 -0.1 971,109 + Pf1N1B4_842 0.89 -0.4 971,109 + Pf1N1B4_842 0.89 +2.5 971,109 + Pf1N1B4_842 0.89 +0.1 971,109 + -0.4 971,110 - Pf1N1B4_842 0.89 -1.9 971,110 - Pf1N1B4_842 0.89 +0.1 971,110 - Pf1N1B4_842 0.89 +1.1 971,110 - Pf1N1B4_842 0.89 +1.1 971,110 - Pf1N1B4_842 0.89 -0.2 971,174 + -0.9 971,175 - -0.9 971,175 - -1.5 971,208 + -0.7 971,209 - +0.5
Or see this region's nucleotide sequence