Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_62

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_60 and Pf1N1B4_61 are separated by 276 nucleotidesPf1N1B4_61 and Pf1N1B4_62 are separated by 71 nucleotidesPf1N1B4_62 and Pf1N1B4_63 are separated by 200 nucleotidesPf1N1B4_63 and Pf1N1B4_64 are separated by 109 nucleotides Pf1N1B4_60 - Serine phosphatase RsbU, regulator of sigma subunit, at 64,018 to 65,199 _60 Pf1N1B4_61 - FIG00953170: hypothetical protein, at 65,476 to 65,775 _61 Pf1N1B4_62 - VacJ-like lipoprotein precursor, at 65,847 to 66,536 _62 Pf1N1B4_63 - Phosphonoacetaldehyde phosphonohydrolase-related protein, at 66,737 to 67,357 _63 Pf1N1B4_64 - Chromosome segregation ATPases, at 67,467 to 67,730 _64 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 65.279 kb on - strandat 65.315 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.319 kb on - strandat 65.325 kb on - strandat 65.344 kb on - strandat 65.344 kb on - strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.434 kb on + strandat 65.434 kb on + strandat 65.434 kb on + strandat 65.497 kb on + strandat 65.498 kb on - strandat 65.754 kb on + strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.773 kb on + strandat 66.598 kb on - strandat 66.598 kb on - strandat 66.598 kb on - strandat 66.598 kb on - strandat 66.598 kb on - strandat 66.598 kb on - strandat 66.600 kb on - strandat 66.600 kb on - strandat 66.619 kb on - strandat 66.707 kb on + strandat 66.716 kb on + strandat 66.717 kb on - strandat 66.717 kb on - strandat 66.717 kb on - strandat 66.717 kb on - strandat 66.719 kb on + strandat 66.720 kb on - strandat 66.720 kb on - strandat 66.720 kb on - strandat 66.720 kb on - strandat 66.720 kb on - strandat 66.737 kb on - strandat 66.786 kb on + strandat 66.786 kb on + strandat 66.787 kb on - strandat 66.830 kb on - strand, within Pf1N1B4_63at 66.830 kb on - strand, within Pf1N1B4_63at 66.830 kb on - strand, within Pf1N1B4_63at 66.991 kb on + strandat 66.992 kb on - strandat 66.992 kb on - strand, within Pf1N1B4_63at 67.322 kb on - strandat 67.390 kb on - strandat 67.394 kb on + strandat 67.394 kb on + strandat 67.395 kb on - strandat 67.395 kb on - strandat 67.408 kb on - strandat 67.408 kb on - strandat 67.433 kb on + strandat 67.434 kb on - strandat 67.451 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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65,279 - -0.3
65,315 - -0.3
65,319 - +1.0
65,319 - -1.3
65,319 - -1.3
65,319 - -0.3
65,319 - +0.3
65,319 - +0.9
65,319 - -0.3
65,319 - +1.3
65,325 - +1.1
65,344 - +0.3
65,344 - -1.3
65,410 + -0.7
65,410 + +1.3
65,410 + +2.9
65,410 + -2.3
65,410 + +1.5
65,410 + -1.7
65,410 + -0.3
65,410 + +0.7
65,410 + +1.0
65,410 + -0.3
65,410 + +0.7
65,410 + -0.3
65,434 + -0.3
65,434 + -0.5
65,434 + -0.5
65,497 + +0.7
65,498 - +0.7
65,754 + -2.9
65,755 - -0.1
65,755 - +1.3
65,755 - +1.3
65,755 - +0.0
65,755 - -0.3
65,773 + +0.0
66,598 - -1.8
66,598 - +2.8
66,598 - +2.7
66,598 - -0.1
66,598 - +0.3
66,598 - +0.7
66,600 - -1.3
66,600 - -1.3
66,619 - -2.3
66,707 + +1.9
66,716 + +1.9
66,717 - +1.0
66,717 - -0.5
66,717 - -0.7
66,717 - -1.3
66,719 + +1.5
66,720 - -0.8
66,720 - +1.7
66,720 - -0.3
66,720 - -0.9
66,720 - +0.6
66,737 - +0.7
66,786 + -0.1
66,786 + -0.1
66,787 - +1.3
66,830 - Pf1N1B4_63 0.15 -1.3
66,830 - Pf1N1B4_63 0.15 +0.0
66,830 - Pf1N1B4_63 0.15 -0.1
66,991 + -0.3
66,992 - +0.3
66,992 - Pf1N1B4_63 0.41 -0.7
67,322 - -0.5
67,390 - -2.0
67,394 + +0.7
67,394 + +2.2
67,395 - +0.3
67,395 - +2.0
67,408 - +0.3
67,408 - -0.7
67,433 + -0.3
67,434 - -0.3
67,451 + +0.3

Or see this region's nucleotide sequence