Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5959

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5958 and Pf1N1B4_5959 are separated by 311 nucleotidesPf1N1B4_5959 and Pf1N1B4_5960 are separated by 7 nucleotidesPf1N1B4_5960 and Pf1N1B4_5961 are separated by 63 nucleotides Pf1N1B4_5958 - Ferrichrome-iron receptor, at 406,249 to 408,372 _5958 Pf1N1B4_5959 - Probable signal peptide protein, at 408,684 to 408,947 _5959 Pf1N1B4_5960 - Cytochrome b, at 408,955 to 409,482 _5960 Pf1N1B4_5961 - Major facilitator superfamily transporter, at 409,546 to 411,222 _5961 Position (kb) 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 407.698 kb on + strand, within Pf1N1B4_5958at 407.699 kb on - strand, within Pf1N1B4_5958at 407.701 kb on + strand, within Pf1N1B4_5958at 407.701 kb on + strand, within Pf1N1B4_5958at 407.702 kb on - strand, within Pf1N1B4_5958at 407.723 kb on - strand, within Pf1N1B4_5958at 407.758 kb on - strand, within Pf1N1B4_5958at 407.758 kb on - strand, within Pf1N1B4_5958at 407.986 kb on + strandat 407.986 kb on + strand, within Pf1N1B4_5958at 408.001 kb on + strand, within Pf1N1B4_5958at 408.001 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.151 kb on + strand, within Pf1N1B4_5958at 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strandat 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strand, within Pf1N1B4_5958at 408.152 kb on - strandat 408.152 kb on - strand, within Pf1N1B4_5958at 408.202 kb on + strandat 408.202 kb on + strandat 408.202 kb on + strandat 408.202 kb on + strandat 408.286 kb on + strandat 408.286 kb on + strandat 408.287 kb on - strandat 408.287 kb on - strandat 408.287 kb on - strandat 408.289 kb on + strandat 408.289 kb on + strandat 408.289 kb on + strandat 408.361 kb on + strandat 408.411 kb on + strandat 408.411 kb on + strandat 408.412 kb on - strandat 408.412 kb on - strandat 408.528 kb on + strandat 408.529 kb on - strandat 408.537 kb on - strandat 408.542 kb on + strandat 408.542 kb on + strandat 408.543 kb on - strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.668 kb on - strandat 408.668 kb on - strandat 408.690 kb on - strandat 408.817 kb on - strand, within Pf1N1B4_5959at 408.855 kb on + strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.901 kb on - strandat 408.901 kb on - strand, within Pf1N1B4_5959at 408.945 kb on + strandat 408.992 kb on + strandat 408.992 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 409.084 kb on + strand, within Pf1N1B4_5960at 409.085 kb on - strand, within Pf1N1B4_5960at 409.091 kb on + strand, within Pf1N1B4_5960at 409.092 kb on - strand, within Pf1N1B4_5960at 409.321 kb on + strand, within Pf1N1B4_5960at 409.321 kb on + strand, within Pf1N1B4_5960at 409.322 kb on - strand, within Pf1N1B4_5960at 409.322 kb on - strand, within Pf1N1B4_5960at 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.646 kb on + strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.797 kb on - strand, within Pf1N1B4_5961at 409.797 kb on - strand, within Pf1N1B4_5961at 409.811 kb on + strand, within Pf1N1B4_5961at 409.811 kb on + strand, within Pf1N1B4_5961at 409.811 kb on + strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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407,698 + Pf1N1B4_5958 0.68 +0.9
407,699 - Pf1N1B4_5958 0.68 -1.5
407,701 + Pf1N1B4_5958 0.68 -1.5
407,701 + Pf1N1B4_5958 0.68 +0.7
407,702 - Pf1N1B4_5958 0.68 +0.9
407,723 - Pf1N1B4_5958 0.69 +0.7
407,758 - Pf1N1B4_5958 0.71 +0.5
407,758 - Pf1N1B4_5958 0.71 -1.5
407,986 + -0.5
407,986 + Pf1N1B4_5958 0.82 +0.1
408,001 + Pf1N1B4_5958 0.82 -0.2
408,001 + Pf1N1B4_5958 0.82 +0.9
408,151 + Pf1N1B4_5958 0.90 -0.9
408,151 + Pf1N1B4_5958 0.90 +0.5
408,151 + Pf1N1B4_5958 0.90 -1.5
408,151 + Pf1N1B4_5958 0.90 -0.2
408,152 - Pf1N1B4_5958 0.90 -1.5
408,152 - +0.1
408,152 - Pf1N1B4_5958 0.90 +1.5
408,152 - Pf1N1B4_5958 0.90 +0.4
408,152 - Pf1N1B4_5958 0.90 +1.1
408,152 - -3.5
408,152 - Pf1N1B4_5958 0.90 -2.0
408,202 + -1.5
408,202 + -0.1
408,202 + +0.1
408,202 + -0.6
408,286 + +0.9
408,286 + -2.5
408,287 - +1.1
408,287 - +1.6
408,287 - -1.1
408,289 + +2.0
408,289 + +0.5
408,289 + -2.0
408,361 + +1.0
408,411 + -0.2
408,411 + +1.5
408,412 - +0.5
408,412 - +0.1
408,528 + -1.3
408,529 - -0.2
408,537 - -1.5
408,542 + -0.5
408,542 + +0.5
408,543 - +0.1
408,667 + -1.5
408,667 + +0.8
408,667 + +1.4
408,667 + -1.5
408,668 - +0.9
408,668 - +0.4
408,690 - +0.9
408,817 - Pf1N1B4_5959 0.50 -0.9
408,855 + Pf1N1B4_5959 0.65 -1.5
408,865 - Pf1N1B4_5959 0.69 +0.0
408,865 - Pf1N1B4_5959 0.69 +0.5
408,865 - Pf1N1B4_5959 0.69 -0.2
408,900 + Pf1N1B4_5959 0.82 -0.7
408,900 + Pf1N1B4_5959 0.82 -0.5
408,900 + Pf1N1B4_5959 0.82 -0.4
408,901 - -0.5
408,901 - Pf1N1B4_5959 0.82 -1.5
408,945 + +1.1
408,992 + -0.1
408,992 + -0.9
408,996 + -1.5
408,996 + +0.1
408,996 + -0.1
408,996 + -0.5
408,996 + +0.9
408,996 + +0.7
408,996 + +1.0
409,084 + Pf1N1B4_5960 0.24 +0.1
409,085 - Pf1N1B4_5960 0.25 -0.1
409,091 + Pf1N1B4_5960 0.26 +0.5
409,092 - Pf1N1B4_5960 0.26 +0.0
409,321 + Pf1N1B4_5960 0.69 +2.0
409,321 + Pf1N1B4_5960 0.69 +1.9
409,322 - Pf1N1B4_5960 0.70 -0.5
409,322 - Pf1N1B4_5960 0.70 +0.4
409,547 + +0.1
409,547 + +0.3
409,547 + +1.2
409,547 + -0.2
409,547 + -0.9
409,547 + +0.5
409,548 - +1.1
409,548 - +1.4
409,548 - -1.2
409,548 - -0.1
409,548 - -1.3
409,548 - +0.2
409,548 - +0.1
409,548 - -1.1
409,548 - +0.7
409,548 - -0.9
409,646 + +0.1
409,647 - -1.5
409,647 - +1.1
409,647 - +1.4
409,647 - +1.2
409,647 - -0.5
409,647 - -1.0
409,797 - Pf1N1B4_5961 0.15 +0.5
409,797 - Pf1N1B4_5961 0.15 -0.7
409,811 + Pf1N1B4_5961 0.16 +1.4
409,811 + Pf1N1B4_5961 0.16 +0.1
409,811 + Pf1N1B4_5961 0.16 +0.1
409,812 - Pf1N1B4_5961 0.16 +1.2
409,812 - Pf1N1B4_5961 0.16 +0.5
409,812 - Pf1N1B4_5961 0.16 -1.0
409,812 - Pf1N1B4_5961 0.16 -0.5
409,812 - Pf1N1B4_5961 0.16 -0.1
409,812 - Pf1N1B4_5961 0.16 -0.7
409,812 - Pf1N1B4_5961 0.16 -0.9

Or see this region's nucleotide sequence