Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5749 and Pf1N1B4_5750 are separated by 240 nucleotides Pf1N1B4_5750 and Pf1N1B4_5751 are separated by 78 nucleotides Pf1N1B4_5751 and Pf1N1B4_5752 are separated by 154 nucleotides Pf1N1B4_5752 and Pf1N1B4_5753 are separated by 75 nucleotides
Pf1N1B4_5749 - Molybdenum cofactor biosynthesis protein MoaB, at 189,990 to 190,544
_5749
Pf1N1B4_5750 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 190,785 to 191,432
_5750
Pf1N1B4_5751 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 191,511 to 193,040
_5751
Pf1N1B4_5752 - Nitric oxide-dependent regulator DnrN or NorA, at 193,195 to 193,869
_5752
Pf1N1B4_5753 - putative membrane protein, at 193,945 to 194,382
_5753
Position (kb) 191
192
193
194 Strain fitness (log2 ratio) -1
0
1
2 at 190.624 kb on - strand at 190.640 kb on - strand at 190.773 kb on + strand at 190.813 kb on - strand at 190.813 kb on - strand at 191.057 kb on - strand, within Pf1N1B4_5750 at 191.188 kb on + strand, within Pf1N1B4_5750 at 191.189 kb on - strand, within Pf1N1B4_5750 at 191.399 kb on - strand at 191.681 kb on + strand, within Pf1N1B4_5751 at 191.852 kb on + strand, within Pf1N1B4_5751 at 191.854 kb on + strand at 191.854 kb on + strand, within Pf1N1B4_5751 at 191.855 kb on - strand, within Pf1N1B4_5751 at 192.014 kb on - strand, within Pf1N1B4_5751 at 192.320 kb on + strand, within Pf1N1B4_5751 at 192.321 kb on - strand at 192.327 kb on + strand, within Pf1N1B4_5751 at 192.438 kb on + strand at 192.694 kb on + strand, within Pf1N1B4_5751 at 192.694 kb on + strand, within Pf1N1B4_5751 at 192.694 kb on + strand, within Pf1N1B4_5751 at 192.695 kb on - strand, within Pf1N1B4_5751 at 192.763 kb on + strand, within Pf1N1B4_5751 at 192.952 kb on + strand at 192.953 kb on - strand at 193.044 kb on - strand at 193.044 kb on - strand at 193.047 kb on - strand at 193.047 kb on - strand at 193.058 kb on - strand at 193.755 kb on + strand, within Pf1N1B4_5752 at 193.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 190,624 - +1.7 190,640 - +0.9 190,773 + +0.3 190,813 - +1.3 190,813 - -0.7 191,057 - Pf1N1B4_5750 0.42 +2.4 191,188 + Pf1N1B4_5750 0.62 -0.9 191,189 - Pf1N1B4_5750 0.62 -1.1 191,399 - +0.5 191,681 + Pf1N1B4_5751 0.11 +1.2 191,852 + Pf1N1B4_5751 0.22 +1.1 191,854 + -1.5 191,854 + Pf1N1B4_5751 0.22 +1.8 191,855 - Pf1N1B4_5751 0.22 +0.4 192,014 - Pf1N1B4_5751 0.33 +0.5 192,320 + Pf1N1B4_5751 0.53 +1.9 192,321 - +0.3 192,327 + Pf1N1B4_5751 0.53 +1.9 192,438 + +0.5 192,694 + Pf1N1B4_5751 0.77 +0.5 192,694 + Pf1N1B4_5751 0.77 +1.3 192,694 + Pf1N1B4_5751 0.77 +0.7 192,695 - Pf1N1B4_5751 0.77 +0.5 192,763 + Pf1N1B4_5751 0.82 -0.0 192,952 + +0.8 192,953 - +1.5 193,044 - +2.2 193,044 - -0.7 193,047 - -0.3 193,047 - +0.7 193,058 - +0.1 193,755 + Pf1N1B4_5752 0.83 +0.5 193,942 + +1.1
Or see this region's nucleotide sequence