Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4233

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4231 and Pf1N1B4_4232 are separated by 3 nucleotidesPf1N1B4_4232 and Pf1N1B4_4233 are separated by 208 nucleotidesPf1N1B4_4233 and Pf1N1B4_4234 are separated by 188 nucleotides Pf1N1B4_4231 - FIG00956471: hypothetical protein, at 4,690,689 to 4,691,060 _4231 Pf1N1B4_4232 - FIG00958400: hypothetical protein, at 4,691,064 to 4,691,246 _4232 Pf1N1B4_4233 - Transcriptional regulator, LysR family, at 4,691,455 to 4,692,348 _4233 Pf1N1B4_4234 - putative transport protein, at 4,692,537 to 4,693,898 _4234 Position (kb) 4691 4692 4693Strain fitness (log2 ratio) -2 -1 0 1at 4690.589 kb on + strandat 4690.589 kb on + strandat 4690.904 kb on + strand, within Pf1N1B4_4231at 4690.905 kb on - strand, within Pf1N1B4_4231at 4690.931 kb on - strand, within Pf1N1B4_4231at 4690.945 kb on + strandat 4690.945 kb on + strandat 4690.946 kb on - strandat 4691.169 kb on - strand, within Pf1N1B4_4232at 4691.169 kb on - strand, within Pf1N1B4_4232at 4691.304 kb on + strandat 4691.414 kb on + strandat 4691.456 kb on + strandat 4692.454 kb on + strandat 4692.643 kb on - strandat 4693.033 kb on - strand, within Pf1N1B4_4234at 4693.122 kb on + strand, within Pf1N1B4_4234at 4693.247 kb on + strand, within Pf1N1B4_4234at 4693.248 kb on - strand, within Pf1N1B4_4234at 4693.348 kb on - strand, within Pf1N1B4_4234

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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4,690,589 + +0.6
4,690,589 + +1.2
4,690,904 + Pf1N1B4_4231 0.58 -1.4
4,690,905 - Pf1N1B4_4231 0.58 +0.7
4,690,931 - Pf1N1B4_4231 0.65 -0.4
4,690,945 + -1.4
4,690,945 + -1.4
4,690,946 - +0.6
4,691,169 - Pf1N1B4_4232 0.57 -1.4
4,691,169 - Pf1N1B4_4232 0.57 -0.6
4,691,304 + +1.4
4,691,414 + +0.9
4,691,456 + -0.8
4,692,454 + +0.4
4,692,643 - +0.3
4,693,033 - Pf1N1B4_4234 0.36 -2.0
4,693,122 + Pf1N1B4_4234 0.43 -1.0
4,693,247 + Pf1N1B4_4234 0.52 -0.2
4,693,248 - Pf1N1B4_4234 0.52 -1.4
4,693,348 - Pf1N1B4_4234 0.60 -0.4

Or see this region's nucleotide sequence