Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3341 and Dsui_3342 are separated by 15 nucleotides Dsui_3342 and Dsui_3343 overlap by 1 nucleotides Dsui_3343 and Dsui_3344 are separated by 61 nucleotides
Dsui_3341: Dsui_3341 - lipopolysaccharide heptosyltransferase II, at 3,580,266 to 3,581,273
_3341
Dsui_3342: Dsui_3342 - ketosteroid isomerase-like enzyme, at 3,581,289 to 3,581,726
_3342
Dsui_3343: Dsui_3343 - putative hydrolase of the alpha/beta-hydrolase fold protein, at 3,581,726 to 3,582,718
_3343
Dsui_3344: Dsui_3344 - phosphomannomutase, at 3,582,780 to 3,584,174
_3344
Position (kb)
3581
3582
3583 Strain fitness (log2 ratio)
-1
0
1 at 3581.282 kb on - strand at 3581.295 kb on + strand at 3581.343 kb on + strand, within Dsui_3342 at 3581.343 kb on + strand, within Dsui_3342 at 3581.343 kb on + strand, within Dsui_3342 at 3581.457 kb on + strand, within Dsui_3342 at 3581.541 kb on + strand, within Dsui_3342 at 3581.579 kb on - strand, within Dsui_3342 at 3581.776 kb on + strand at 3581.813 kb on + strand at 3581.864 kb on + strand, within Dsui_3343 at 3581.894 kb on + strand at 3581.900 kb on + strand, within Dsui_3343 at 3581.902 kb on - strand at 3582.315 kb on - strand at 3582.315 kb on - strand at 3582.333 kb on + strand, within Dsui_3343 at 3582.475 kb on - strand, within Dsui_3343 at 3582.540 kb on - strand at 3582.571 kb on - strand at 3582.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 3,581,282 - -0.3 3,581,295 + -0.4 3,581,343 + Dsui_3342 0.12 -0.3 3,581,343 + Dsui_3342 0.12 -0.1 3,581,343 + Dsui_3342 0.12 +0.1 3,581,457 + Dsui_3342 0.38 +0.3 3,581,541 + Dsui_3342 0.58 -0.4 3,581,579 - Dsui_3342 0.66 -0.3 3,581,776 + +0.7 3,581,813 + -0.9 3,581,864 + Dsui_3343 0.14 -1.6 3,581,894 + +0.7 3,581,900 + Dsui_3343 0.18 +0.7 3,581,902 - +0.7 3,582,315 - +0.7 3,582,315 - -0.3 3,582,333 + Dsui_3343 0.61 +0.7 3,582,475 - Dsui_3343 0.75 -1.3 3,582,540 - +0.7 3,582,571 - -0.3 3,582,587 - +0.7
Or see this region's nucleotide sequence