Strain Fitness in Dechlorosoma suillum PS around Dsui_3178

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3176 and Dsui_3177 overlap by 4 nucleotidesDsui_3177 and Dsui_3178 overlap by 10 nucleotidesDsui_3178 and Dsui_3179 are separated by 16 nucleotides Dsui_3176: Dsui_3176 - RND family efflux transporter, MFP subunit, at 3,406,898 to 3,408,184 _3176 Dsui_3177: Dsui_3177 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,408,181 to 3,408,909 _3177 Dsui_3178: Dsui_3178 - ABC-type antimicrobial peptide transport system, permease component, at 3,408,900 to 3,410,111 _3178 Dsui_3179: Dsui_3179 - signal transduction histidine kinase, at 3,410,128 to 3,411,192 _3179 Position (kb) 3408 3409 3410 3411Strain fitness (log2 ratio) -2 -1 0 1at 3408.046 kb on - strandat 3408.087 kb on + strandat 3408.159 kb on + strandat 3408.399 kb on + strandat 3408.407 kb on - strandat 3408.516 kb on - strand, within Dsui_3177at 3408.518 kb on + strand, within Dsui_3177at 3408.791 kb on - strand, within Dsui_3177at 3408.925 kb on - strandat 3408.974 kb on + strandat 3408.977 kb on - strandat 3409.189 kb on - strand, within Dsui_3178at 3409.208 kb on - strand, within Dsui_3178at 3409.220 kb on - strandat 3409.274 kb on - strandat 3409.291 kb on + strandat 3409.299 kb on - strand, within Dsui_3178at 3409.397 kb on + strand, within Dsui_3178at 3409.400 kb on - strandat 3409.401 kb on + strandat 3409.462 kb on + strandat 3409.491 kb on - strandat 3409.532 kb on - strandat 3409.548 kb on + strand, within Dsui_3178at 3409.577 kb on + strandat 3409.679 kb on + strand, within Dsui_3178at 3409.756 kb on + strand, within Dsui_3178at 3409.908 kb on + strand, within Dsui_3178at 3410.219 kb on - strandat 3410.232 kb on + strandat 3410.425 kb on - strandat 3410.485 kb on - strand, within Dsui_3179at 3410.504 kb on - strand, within Dsui_3179at 3410.590 kb on - strand, within Dsui_3179at 3410.703 kb on + strandat 3410.751 kb on + strandat 3410.759 kb on - strand, within Dsui_3179at 3410.999 kb on - strand, within Dsui_3179

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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3,408,046 - +0.7
3,408,087 + -0.9
3,408,159 + +0.7
3,408,399 + -0.9
3,408,407 - -0.3
3,408,516 - Dsui_3177 0.46 -0.9
3,408,518 + Dsui_3177 0.46 +0.7
3,408,791 - Dsui_3177 0.84 -2.1
3,408,925 - +0.7
3,408,974 + +0.7
3,408,977 - +0.7
3,409,189 - Dsui_3178 0.24 -0.9
3,409,208 - Dsui_3178 0.25 -1.3
3,409,220 - +0.7
3,409,274 - +0.7
3,409,291 + -0.3
3,409,299 - Dsui_3178 0.33 +0.7
3,409,397 + Dsui_3178 0.41 -0.3
3,409,400 - -0.3
3,409,401 + +0.7
3,409,462 + -0.9
3,409,491 - +0.7
3,409,532 - -0.9
3,409,548 + Dsui_3178 0.53 -0.9
3,409,577 + +0.7
3,409,679 + Dsui_3178 0.64 -1.3
3,409,756 + Dsui_3178 0.71 -0.3
3,409,908 + Dsui_3178 0.83 -2.3
3,410,219 - -1.3
3,410,232 + +0.7
3,410,425 - +0.7
3,410,485 - Dsui_3179 0.34 -2.1
3,410,504 - Dsui_3179 0.35 -0.3
3,410,590 - Dsui_3179 0.43 +0.3
3,410,703 + +0.7
3,410,751 + +0.7
3,410,759 - Dsui_3179 0.59 -0.9
3,410,999 - Dsui_3179 0.82 -2.3

Or see this region's nucleotide sequence