Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3006 and Dsui_3007 are separated by 4 nucleotides Dsui_3007 and Dsui_3008 overlap by 1 nucleotides Dsui_3008 and Dsui_3009 are separated by 128 nucleotides Dsui_3009 and Dsui_3010 are separated by 21 nucleotides
Dsui_3006: Dsui_3006 - (NiFe) hydrogenase assembly chaperone, HybE family, at 3,220,352 to 3,220,969
_3006
Dsui_3007: Dsui_3007 - hydrogenase assembly chaperone HypC/HupF, at 3,220,974 to 3,221,261
_3007
Dsui_3008: Dsui_3008 - hydrogenase expression/formation protein, at 3,221,261 to 3,221,761
_3008
Dsui_3009: Dsui_3009 - Ni,Fe-hydrogenase I large subunit, at 3,221,890 to 3,223,602
_3009
Dsui_3010: Dsui_3010 - polysulfide reductase, at 3,223,624 to 3,224,781
_3010
Position (kb)
3221
3222
3223
3224 Strain fitness (log2 ratio)
-2
-1
0
1 at 3221.107 kb on - strand, within Dsui_3007 at 3221.137 kb on + strand at 3221.246 kb on - strand at 3221.416 kb on - strand, within Dsui_3008 at 3221.445 kb on - strand, within Dsui_3008 at 3221.590 kb on - strand, within Dsui_3008 at 3221.616 kb on - strand, within Dsui_3008 at 3221.657 kb on + strand, within Dsui_3008 at 3221.700 kb on - strand at 3221.700 kb on - strand, within Dsui_3008 at 3221.707 kb on - strand, within Dsui_3008 at 3221.757 kb on - strand at 3221.953 kb on - strand at 3221.969 kb on - strand at 3222.079 kb on + strand at 3222.229 kb on - strand at 3222.361 kb on - strand, within Dsui_3009 at 3222.528 kb on + strand, within Dsui_3009 at 3222.585 kb on + strand at 3222.585 kb on + strand at 3222.662 kb on + strand at 3222.739 kb on - strand, within Dsui_3009 at 3222.768 kb on - strand, within Dsui_3009 at 3222.773 kb on - strand, within Dsui_3009 at 3222.827 kb on + strand at 3223.153 kb on - strand at 3223.243 kb on + strand at 3223.265 kb on + strand, within Dsui_3009 at 3223.273 kb on - strand at 3223.405 kb on - strand, within Dsui_3009 at 3223.631 kb on + strand at 3223.632 kb on + strand at 3223.821 kb on + strand at 3223.951 kb on + strand, within Dsui_3010 at 3224.158 kb on - strand, within Dsui_3010 at 3224.242 kb on - strand, within Dsui_3010 at 3224.293 kb on - strand at 3224.442 kb on + strand, within Dsui_3010 at 3224.469 kb on + strand, within Dsui_3010
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 3,221,107 - Dsui_3007 0.46 -2.3 3,221,137 + +0.7 3,221,246 - +0.7 3,221,416 - Dsui_3008 0.31 -0.3 3,221,445 - Dsui_3008 0.37 -1.3 3,221,590 - Dsui_3008 0.66 -1.7 3,221,616 - Dsui_3008 0.71 -0.9 3,221,657 + Dsui_3008 0.79 -0.3 3,221,700 - -0.3 3,221,700 - Dsui_3008 0.88 -1.3 3,221,707 - Dsui_3008 0.89 -0.3 3,221,757 - +0.7 3,221,953 - -0.3 3,221,969 - -0.3 3,222,079 + -0.3 3,222,229 - -0.9 3,222,361 - Dsui_3009 0.27 -0.3 3,222,528 + Dsui_3009 0.37 -0.5 3,222,585 + -0.9 3,222,585 + -0.9 3,222,662 + +0.7 3,222,739 - Dsui_3009 0.50 -0.3 3,222,768 - Dsui_3009 0.51 -0.9 3,222,773 - Dsui_3009 0.52 -1.7 3,222,827 + -1.7 3,223,153 - -0.3 3,223,243 + +0.7 3,223,265 + Dsui_3009 0.80 -0.9 3,223,273 - -0.9 3,223,405 - Dsui_3009 0.88 -1.3 3,223,631 + +0.7 3,223,632 + +0.7 3,223,821 + -0.3 3,223,951 + Dsui_3010 0.28 -1.7 3,224,158 - Dsui_3010 0.46 -2.1 3,224,242 - Dsui_3010 0.53 +0.7 3,224,293 - +0.7 3,224,442 + Dsui_3010 0.71 -1.7 3,224,469 + Dsui_3010 0.73 +0.7
Or see this region's nucleotide sequence