Strain Fitness in Dechlorosoma suillum PS around Dsui_2976

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2975 and Dsui_2976 are separated by 164 nucleotidesDsui_2976 and Dsui_2977 overlap by 4 nucleotidesDsui_2977 and Dsui_2978 are separated by 290 nucleotides Dsui_2975: Dsui_2975 - TonB-dependent siderophore receptor, at 3,180,448 to 3,182,874 _2975 Dsui_2976: Dsui_2976 - Fe2+-dicitrate sensor, membrane component, at 3,183,039 to 3,184,058 _2976 Dsui_2977: Dsui_2977 - RNA polymerase sigma factor, sigma-70 family, at 3,184,055 to 3,184,567 _2977 Dsui_2978: Dsui_2978 - dihydroorotate dehydrogenase, subfamily 2, at 3,184,858 to 3,185,919 _2978 Position (kb) 3183 3184 3185Strain fitness (log2 ratio) -2 -1 0 1at 3182.195 kb on - strandat 3182.225 kb on + strandat 3182.247 kb on + strand, within Dsui_2975at 3182.254 kb on + strandat 3182.255 kb on - strandat 3182.341 kb on - strand, within Dsui_2975at 3182.379 kb on - strand, within Dsui_2975at 3182.542 kb on - strand, within Dsui_2975at 3182.689 kb on - strandat 3182.902 kb on - strandat 3182.919 kb on - strandat 3182.929 kb on - strandat 3182.931 kb on + strandat 3182.939 kb on - strandat 3183.114 kb on - strandat 3183.184 kb on - strand, within Dsui_2976at 3183.358 kb on + strandat 3183.364 kb on + strandat 3183.419 kb on - strand, within Dsui_2976at 3183.503 kb on - strand, within Dsui_2976at 3183.560 kb on - strand, within Dsui_2976at 3183.584 kb on - strand, within Dsui_2976at 3183.733 kb on + strandat 3184.106 kb on - strandat 3184.106 kb on - strandat 3184.164 kb on + strand, within Dsui_2977at 3184.319 kb on - strand, within Dsui_2977at 3184.360 kb on - strand, within Dsui_2977at 3184.400 kb on - strand, within Dsui_2977at 3184.445 kb on + strand, within Dsui_2977at 3184.484 kb on - strand, within Dsui_2977at 3184.521 kb on - strandat 3184.537 kb on - strandat 3184.747 kb on - strandat 3184.851 kb on - strandat 3184.882 kb on + strandat 3184.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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3,182,195 - +0.7
3,182,225 + +0.7
3,182,247 + Dsui_2975 0.74 -1.3
3,182,254 + +0.7
3,182,255 - +0.7
3,182,341 - Dsui_2975 0.78 -0.3
3,182,379 - Dsui_2975 0.80 -0.8
3,182,542 - Dsui_2975 0.86 -0.3
3,182,689 - -0.3
3,182,902 - -0.3
3,182,919 - +0.4
3,182,929 - +0.2
3,182,931 + -2.3
3,182,939 - -1.4
3,183,114 - -0.5
3,183,184 - Dsui_2976 0.14 -0.9
3,183,358 + +0.7
3,183,364 + +0.7
3,183,419 - Dsui_2976 0.37 +0.1
3,183,503 - Dsui_2976 0.45 -0.5
3,183,560 - Dsui_2976 0.51 -0.0
3,183,584 - Dsui_2976 0.53 -0.3
3,183,733 + -0.3
3,184,106 - -0.0
3,184,106 - +0.1
3,184,164 + Dsui_2977 0.21 -0.3
3,184,319 - Dsui_2977 0.51 -0.0
3,184,360 - Dsui_2977 0.59 +0.1
3,184,400 - Dsui_2977 0.67 -0.4
3,184,445 + Dsui_2977 0.76 +0.7
3,184,484 - Dsui_2977 0.84 -0.2
3,184,521 - +0.2
3,184,537 - -1.1
3,184,747 - -0.9
3,184,851 - -0.3
3,184,882 + -0.2
3,184,882 + -0.0

Or see this region's nucleotide sequence