Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2904 and Dsui_2905 are separated by 210 nucleotides Dsui_2905 and Dsui_2906 are separated by 64 nucleotides Dsui_2906 and Dsui_2907 are separated by 252 nucleotides
Dsui_2904: Dsui_2904 - threonine synthase, at 3,106,560 to 3,107,999
_2904
Dsui_2905: Dsui_2905 - flagellin/flagellar hook associated protein, at 3,108,210 to 3,109,388
_2905
Dsui_2906: Dsui_2906 - Uncharacterized conserved protein (DUF2249), at 3,109,453 to 3,109,710
_2906
Dsui_2907: Dsui_2907 - homoserine dehydrogenase, at 3,109,963 to 3,111,273
_2907
Position (kb)
3108
3109
3110 Strain fitness (log2 ratio)
-2
-1
0
1 at 3108.051 kb on - strand at 3108.136 kb on - strand at 3108.255 kb on - strand at 3108.451 kb on + strand, within Dsui_2905 at 3108.514 kb on + strand, within Dsui_2905 at 3108.618 kb on - strand, within Dsui_2905 at 3108.631 kb on + strand at 3108.662 kb on - strand, within Dsui_2905 at 3108.686 kb on + strand, within Dsui_2905 at 3108.741 kb on + strand at 3108.751 kb on - strand, within Dsui_2905 at 3108.755 kb on + strand at 3108.912 kb on + strand at 3109.020 kb on + strand, within Dsui_2905 at 3109.075 kb on - strand, within Dsui_2905 at 3109.185 kb on + strand, within Dsui_2905 at 3109.185 kb on + strand at 3109.193 kb on - strand, within Dsui_2905 at 3109.226 kb on - strand, within Dsui_2905 at 3109.226 kb on - strand, within Dsui_2905 at 3109.248 kb on + strand, within Dsui_2905 at 3109.346 kb on + strand at 3109.356 kb on + strand at 3109.413 kb on - strand at 3109.450 kb on + strand at 3109.461 kb on + strand at 3109.678 kb on + strand, within Dsui_2906 at 3109.713 kb on - strand at 3109.713 kb on - strand at 3109.768 kb on - strand at 3109.781 kb on + strand at 3109.798 kb on + strand at 3109.799 kb on - strand at 3109.830 kb on - strand at 3109.892 kb on - strand at 3109.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 3,108,051 - +0.7 3,108,136 - -0.8 3,108,255 - +0.7 3,108,451 + Dsui_2905 0.20 -1.8 3,108,514 + Dsui_2905 0.26 -1.8 3,108,618 - Dsui_2905 0.35 +0.7 3,108,631 + -0.3 3,108,662 - Dsui_2905 0.38 -0.3 3,108,686 + Dsui_2905 0.40 +0.7 3,108,741 + +0.7 3,108,751 - Dsui_2905 0.46 +0.7 3,108,755 + -1.3 3,108,912 + +0.7 3,109,020 + Dsui_2905 0.69 +0.7 3,109,075 - Dsui_2905 0.73 -0.3 3,109,185 + Dsui_2905 0.83 -0.8 3,109,185 + +0.7 3,109,193 - Dsui_2905 0.83 +0.7 3,109,226 - Dsui_2905 0.86 -0.8 3,109,226 - Dsui_2905 0.86 +0.7 3,109,248 + Dsui_2905 0.88 -1.6 3,109,346 + +0.7 3,109,356 + -0.3 3,109,413 - -0.3 3,109,450 + -0.8 3,109,461 + -0.3 3,109,678 + Dsui_2906 0.87 +0.7 3,109,713 - +0.7 3,109,713 - -1.3 3,109,768 - -0.8 3,109,781 + -0.3 3,109,798 + -0.3 3,109,799 - -0.3 3,109,830 - +0.7 3,109,892 - -0.1 3,109,940 + +0.7
Or see this region's nucleotide sequence