Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2893 and Dsui_2894 are separated by 103 nucleotides Dsui_2894 and Dsui_2895 overlap by 4 nucleotides Dsui_2895 and Dsui_2896 are separated by 6 nucleotides
Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172
_2893
Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444
_2894
Dsui_2895: Dsui_2895 - ABC-type uncharacterized transport system, periplasmic component, at 3,096,441 to 3,097,430
_2895
Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677
_2896
Position (kb)
3094
3095
3096
3097 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3093.317 kb on + strand at 3093.358 kb on + strand at 3093.445 kb on - strand, within Dsui_2893 at 3093.631 kb on - strand, within Dsui_2893 at 3093.709 kb on - strand, within Dsui_2893 at 3093.713 kb on + strand, within Dsui_2893 at 3094.029 kb on + strand at 3094.042 kb on - strand at 3094.084 kb on - strand at 3094.105 kb on - strand at 3094.133 kb on + strand at 3094.141 kb on - strand at 3094.344 kb on + strand at 3094.421 kb on - strand at 3094.550 kb on + strand, within Dsui_2894 at 3094.595 kb on + strand at 3094.666 kb on + strand at 3094.674 kb on - strand, within Dsui_2894 at 3094.734 kb on - strand, within Dsui_2894 at 3094.800 kb on - strand, within Dsui_2894 at 3094.827 kb on - strand, within Dsui_2894 at 3094.878 kb on - strand, within Dsui_2894 at 3094.946 kb on - strand, within Dsui_2894 at 3094.952 kb on + strand at 3095.047 kb on - strand, within Dsui_2894 at 3095.094 kb on - strand, within Dsui_2894 at 3095.252 kb on - strand at 3095.252 kb on - strand, within Dsui_2894 at 3095.252 kb on - strand, within Dsui_2894 at 3095.375 kb on - strand, within Dsui_2894 at 3095.410 kb on - strand, within Dsui_2894 at 3095.518 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.596 kb on - strand, within Dsui_2894 at 3095.738 kb on + strand at 3095.878 kb on + strand at 3095.896 kb on - strand, within Dsui_2894 at 3095.943 kb on + strand at 3095.945 kb on - strand, within Dsui_2894 at 3095.945 kb on - strand, within Dsui_2894 at 3096.049 kb on + strand at 3096.057 kb on - strand, within Dsui_2894 at 3096.201 kb on - strand, within Dsui_2894 at 3096.279 kb on - strand at 3096.347 kb on + strand at 3096.455 kb on - strand at 3096.460 kb on - strand at 3096.477 kb on - strand at 3096.566 kb on + strand at 3096.574 kb on - strand, within Dsui_2895 at 3096.651 kb on + strand at 3096.712 kb on - strand, within Dsui_2895 at 3096.862 kb on - strand, within Dsui_2895 at 3096.878 kb on - strand, within Dsui_2895 at 3096.964 kb on + strand, within Dsui_2895 at 3097.161 kb on + strand, within Dsui_2895 at 3097.339 kb on - strand at 3097.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 3,093,317 + +0.7 3,093,358 + -0.3 3,093,445 - Dsui_2893 0.52 -1.3 3,093,631 - Dsui_2893 0.64 -1.2 3,093,709 - Dsui_2893 0.69 +0.2 3,093,713 + Dsui_2893 0.70 +0.2 3,094,029 + -0.8 3,094,042 - +0.1 3,094,084 - +0.2 3,094,105 - -0.8 3,094,133 + +0.7 3,094,141 - +0.5 3,094,344 + +0.7 3,094,421 - -0.3 3,094,550 + Dsui_2894 0.13 -0.3 3,094,595 + -0.3 3,094,666 + +0.7 3,094,674 - Dsui_2894 0.18 -1.8 3,094,734 - Dsui_2894 0.21 -0.3 3,094,800 - Dsui_2894 0.24 +0.7 3,094,827 - Dsui_2894 0.25 -0.8 3,094,878 - Dsui_2894 0.28 -0.3 3,094,946 - Dsui_2894 0.31 +0.7 3,094,952 + +0.7 3,095,047 - Dsui_2894 0.36 -1.3 3,095,094 - Dsui_2894 0.38 +0.7 3,095,252 - +0.7 3,095,252 - Dsui_2894 0.45 +0.7 3,095,252 - Dsui_2894 0.45 +0.7 3,095,375 - Dsui_2894 0.51 -0.3 3,095,410 - Dsui_2894 0.52 -1.3 3,095,518 - Dsui_2894 0.57 +0.7 3,095,535 - Dsui_2894 0.58 -0.3 3,095,535 - Dsui_2894 0.58 +0.7 3,095,596 - Dsui_2894 0.61 +0.7 3,095,738 + +0.7 3,095,878 + +0.7 3,095,896 - Dsui_2894 0.75 -1.3 3,095,943 + -0.3 3,095,945 - Dsui_2894 0.77 -0.8 3,095,945 - Dsui_2894 0.77 +0.7 3,096,049 + -0.3 3,096,057 - Dsui_2894 0.82 +0.7 3,096,201 - Dsui_2894 0.89 -1.6 3,096,279 - -0.3 3,096,347 + -0.3 3,096,455 - -0.3 3,096,460 - +0.7 3,096,477 - +0.7 3,096,566 + -0.3 3,096,574 - Dsui_2895 0.13 -1.8 3,096,651 + -0.3 3,096,712 - Dsui_2895 0.27 -3.3 3,096,862 - Dsui_2895 0.43 +0.7 3,096,878 - Dsui_2895 0.44 -0.8 3,096,964 + Dsui_2895 0.53 -0.3 3,097,161 + Dsui_2895 0.73 -0.8 3,097,339 - +0.5 3,097,414 + -1.6
Or see this region's nucleotide sequence