Strain Fitness in Dechlorosoma suillum PS around Dsui_2241

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2240 and Dsui_2241 are separated by 238 nucleotidesDsui_2241 and Dsui_2242 are separated by 250 nucleotidesDsui_2242 and Dsui_2243 overlap by 31 nucleotides Dsui_2240: Dsui_2240 - PAS domain S-box, at 2,384,449 to 2,388,288 _2240 Dsui_2241: Dsui_2241 - OAH/OAS sulfhydrylase, at 2,388,527 to 2,389,801 _2241 Dsui_2242: Dsui_2242 - hypothetical protein, at 2,390,052 to 2,390,546 _2242 Dsui_2243: Dsui_2243 - hypothetical protein, at 2,390,516 to 2,390,797 _2243 Position (kb) 2388 2389 2390Strain fitness (log2 ratio) -2 -1 0 1at 2387.537 kb on - strandat 2387.540 kb on + strand, within Dsui_2240at 2387.648 kb on - strand, within Dsui_2240at 2387.732 kb on + strandat 2388.188 kb on + strandat 2388.225 kb on - strandat 2388.304 kb on + strandat 2388.312 kb on - strandat 2388.537 kb on + strandat 2388.537 kb on + strandat 2388.603 kb on - strandat 2388.624 kb on - strandat 2388.629 kb on - strandat 2388.653 kb on - strandat 2388.714 kb on - strand, within Dsui_2241at 2388.799 kb on - strand, within Dsui_2241at 2388.801 kb on + strandat 2388.886 kb on - strand, within Dsui_2241at 2389.048 kb on + strand, within Dsui_2241at 2389.055 kb on + strand, within Dsui_2241at 2389.055 kb on + strandat 2389.055 kb on + strandat 2389.055 kb on + strand, within Dsui_2241at 2389.055 kb on + strand, within Dsui_2241at 2389.055 kb on + strandat 2389.064 kb on - strand, within Dsui_2241at 2389.179 kb on + strand, within Dsui_2241at 2389.286 kb on + strand, within Dsui_2241at 2389.289 kb on - strand, within Dsui_2241at 2389.318 kb on + strandat 2389.362 kb on + strandat 2389.402 kb on + strandat 2389.402 kb on + strand, within Dsui_2241at 2389.439 kb on - strand, within Dsui_2241at 2389.462 kb on + strandat 2389.462 kb on + strandat 2389.470 kb on - strand, within Dsui_2241at 2389.491 kb on - strand, within Dsui_2241at 2389.491 kb on - strand, within Dsui_2241at 2389.531 kb on - strand, within Dsui_2241at 2389.536 kb on - strand, within Dsui_2241at 2389.541 kb on - strand, within Dsui_2241at 2389.560 kb on + strandat 2389.680 kb on + strandat 2389.683 kb on - strandat 2389.683 kb on - strandat 2389.783 kb on + strandat 2389.953 kb on + strandat 2389.963 kb on + strandat 2389.974 kb on - strandat 2390.037 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.067 kb on - strandat 2390.067 kb on - strandat 2390.193 kb on + strand, within Dsui_2242at 2390.232 kb on + strand, within Dsui_2242at 2390.256 kb on + strand, within Dsui_2242at 2390.386 kb on - strand, within Dsui_2242at 2390.560 kb on + strand, within Dsui_2243at 2390.670 kb on - strand, within Dsui_2243at 2390.732 kb on + strand, within Dsui_2243at 2390.779 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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2,387,537 - -0.0
2,387,540 + Dsui_2240 0.80 -0.0
2,387,648 - Dsui_2240 0.83 -0.0
2,387,732 + +1.0
2,388,188 + -1.4
2,388,225 - -0.0
2,388,304 + -1.0
2,388,312 - -0.6
2,388,537 + -0.0
2,388,537 + +1.0
2,388,603 - -0.8
2,388,624 - +0.1
2,388,629 - +0.4
2,388,653 - -0.5
2,388,714 - Dsui_2241 0.15 -0.2
2,388,799 - Dsui_2241 0.21 +0.2
2,388,801 + +1.0
2,388,886 - Dsui_2241 0.28 -0.5
2,389,048 + Dsui_2241 0.41 -0.6
2,389,055 + Dsui_2241 0.41 +1.0
2,389,055 + +1.0
2,389,055 + +1.0
2,389,055 + Dsui_2241 0.41 +1.0
2,389,055 + Dsui_2241 0.41 -1.4
2,389,055 + -0.0
2,389,064 - Dsui_2241 0.42 -0.7
2,389,179 + Dsui_2241 0.51 -1.6
2,389,286 + Dsui_2241 0.60 -0.6
2,389,289 - Dsui_2241 0.60 -0.4
2,389,318 + +1.0
2,389,362 + +1.0
2,389,402 + +1.0
2,389,402 + Dsui_2241 0.69 -0.0
2,389,439 - Dsui_2241 0.72 -0.2
2,389,462 + +1.0
2,389,462 + +1.0
2,389,470 - Dsui_2241 0.74 +1.0
2,389,491 - Dsui_2241 0.76 -0.0
2,389,491 - Dsui_2241 0.76 -1.4
2,389,531 - Dsui_2241 0.79 -2.0
2,389,536 - Dsui_2241 0.79 -0.6
2,389,541 - Dsui_2241 0.80 +1.0
2,389,560 + +1.0
2,389,680 + -1.6
2,389,683 - -0.0
2,389,683 - -0.6
2,389,783 + -1.5
2,389,953 + +0.9
2,389,963 + -0.1
2,389,974 - -1.9
2,390,037 + +0.9
2,390,059 + -0.6
2,390,059 + -0.6
2,390,059 + -1.6
2,390,059 + -1.6
2,390,059 + +0.9
2,390,059 + -0.6
2,390,059 + +0.9
2,390,059 + -1.1
2,390,067 - +0.9
2,390,067 - +0.9
2,390,193 + Dsui_2242 0.28 -0.1
2,390,232 + Dsui_2242 0.36 -0.5
2,390,256 + Dsui_2242 0.41 -0.2
2,390,386 - Dsui_2242 0.67 -0.6
2,390,560 + Dsui_2243 0.16 -1.2
2,390,670 - Dsui_2243 0.55 -0.3
2,390,732 + Dsui_2243 0.77 -0.6
2,390,779 + -0.1

Or see this region's nucleotide sequence