Strain Fitness in Dechlorosoma suillum PS around Dsui_2191

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2189 and Dsui_2190 are separated by 316 nucleotidesDsui_2190 and Dsui_2191 are separated by 10 nucleotidesDsui_2191 and Dsui_2192 overlap by 16 nucleotidesDsui_2192 and Dsui_2193 are separated by 10 nucleotides Dsui_2189: Dsui_2189 - acyl-CoA synthetase (NDP forming), at 2,323,771 to 2,326,461 _2189 Dsui_2190: Dsui_2190 - Tellurite resistance protein TehB, at 2,326,778 to 2,327,332 _2190 Dsui_2191: Dsui_2191 - squalene-associated FAD-dependent desaturase, at 2,327,343 to 2,328,680 _2191 Dsui_2192: Dsui_2192 - squalene synthase HpnD, at 2,328,665 to 2,329,498 _2192 Dsui_2193: Dsui_2193 - squalene synthase HpnC, at 2,329,509 to 2,330,333 _2193 Position (kb) 2327 2328 2329Strain fitness (log2 ratio) -1 0 1 2at 2326.456 kb on + strandat 2326.584 kb on + strandat 2326.773 kb on - strandat 2326.842 kb on - strandat 2326.842 kb on - strandat 2327.039 kb on - strandat 2327.071 kb on + strandat 2327.088 kb on + strand, within Dsui_2190at 2327.111 kb on + strand, within Dsui_2190at 2327.135 kb on - strandat 2327.294 kb on + strandat 2327.334 kb on - strandat 2327.334 kb on - strandat 2327.334 kb on - strandat 2327.359 kb on - strandat 2327.583 kb on + strand, within Dsui_2191at 2327.598 kb on - strand, within Dsui_2191at 2327.603 kb on - strandat 2327.627 kb on - strand, within Dsui_2191at 2327.649 kb on + strand, within Dsui_2191at 2328.155 kb on + strandat 2328.336 kb on - strand, within Dsui_2191at 2328.487 kb on - strandat 2328.519 kb on - strand, within Dsui_2191at 2328.519 kb on - strandat 2328.728 kb on - strandat 2328.742 kb on + strandat 2328.772 kb on + strandat 2328.797 kb on - strand, within Dsui_2192at 2328.797 kb on - strand, within Dsui_2192at 2328.853 kb on - strand, within Dsui_2192at 2328.861 kb on + strandat 2329.108 kb on - strand, within Dsui_2192at 2329.116 kb on - strand, within Dsui_2192at 2329.123 kb on + strand, within Dsui_2192at 2329.131 kb on - strand, within Dsui_2192at 2329.177 kb on + strandat 2329.186 kb on - strand, within Dsui_2192at 2329.248 kb on + strand, within Dsui_2192at 2329.255 kb on - strand, within Dsui_2192at 2329.276 kb on - strand, within Dsui_2192at 2329.292 kb on - strand, within Dsui_2192at 2329.406 kb on - strand, within Dsui_2192at 2329.600 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
remove
2,326,456 + +1.1
2,326,584 + +1.1
2,326,773 - -0.5
2,326,842 - +0.1
2,326,842 - +1.1
2,327,039 - -0.5
2,327,071 + +1.1
2,327,088 + Dsui_2190 0.56 +0.1
2,327,111 + Dsui_2190 0.60 -0.9
2,327,135 - +1.1
2,327,294 + +1.1
2,327,334 - +1.1
2,327,334 - +1.1
2,327,334 - -0.5
2,327,359 - -0.9
2,327,583 + Dsui_2191 0.18 -0.9
2,327,598 - Dsui_2191 0.19 -0.9
2,327,603 - +1.1
2,327,627 - Dsui_2191 0.21 -0.5
2,327,649 + Dsui_2191 0.23 -0.6
2,328,155 + -1.2
2,328,336 - Dsui_2191 0.74 -0.5
2,328,487 - +0.1
2,328,519 - Dsui_2191 0.88 +0.1
2,328,519 - +2.1
2,328,728 - +0.3
2,328,742 + +0.1
2,328,772 + +1.1
2,328,797 - Dsui_2192 0.16 -0.0
2,328,797 - Dsui_2192 0.16 -0.5
2,328,853 - Dsui_2192 0.23 -0.2
2,328,861 + +0.1
2,329,108 - Dsui_2192 0.53 -0.4
2,329,116 - Dsui_2192 0.54 +0.1
2,329,123 + Dsui_2192 0.55 -1.2
2,329,131 - Dsui_2192 0.56 -1.2
2,329,177 + -0.5
2,329,186 - Dsui_2192 0.62 -0.1
2,329,248 + Dsui_2192 0.70 +1.1
2,329,255 - Dsui_2192 0.71 -0.4
2,329,276 - Dsui_2192 0.73 -0.6
2,329,292 - Dsui_2192 0.75 -0.7
2,329,406 - Dsui_2192 0.89 -0.4
2,329,600 + +1.1

Or see this region's nucleotide sequence