Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2057 and Dsui_2058 overlap by 1 nucleotides Dsui_2058 and Dsui_2059 overlap by 4 nucleotides Dsui_2059 and Dsui_2060 overlap by 1 nucleotides
Dsui_2057: Dsui_2057 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,176,641 to 2,177,354
_2057
Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136
_2058
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877
_2060
Position (kb)
2177
2178
2179 Strain fitness (log2 ratio)
-1
0
1 at 2176.363 kb on + strand at 2176.667 kb on + strand at 2176.807 kb on + strand, within Dsui_2057 at 2176.891 kb on - strand, within Dsui_2057 at 2176.970 kb on + strand, within Dsui_2057 at 2176.978 kb on - strand, within Dsui_2057 at 2177.188 kb on + strand at 2177.196 kb on - strand, within Dsui_2057 at 2177.196 kb on - strand, within Dsui_2057 at 2177.231 kb on - strand, within Dsui_2057 at 2177.299 kb on + strand at 2177.483 kb on - strand, within Dsui_2058 at 2177.519 kb on - strand, within Dsui_2058 at 2177.700 kb on - strand, within Dsui_2058 at 2177.905 kb on + strand, within Dsui_2058 at 2178.017 kb on - strand, within Dsui_2058 at 2178.144 kb on - strand at 2178.146 kb on + strand at 2178.200 kb on + strand at 2178.299 kb on - strand, within Dsui_2059 at 2178.299 kb on - strand, within Dsui_2059 at 2178.334 kb on + strand, within Dsui_2059 at 2178.707 kb on - strand, within Dsui_2059 at 2178.728 kb on - strand, within Dsui_2059 at 2178.883 kb on + strand, within Dsui_2059
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 2,176,363 + +0.1 2,176,667 + +1.1 2,176,807 + Dsui_2057 0.23 +1.1 2,176,891 - Dsui_2057 0.35 +0.5 2,176,970 + Dsui_2057 0.46 -1.7 2,176,978 - Dsui_2057 0.47 +0.1 2,177,188 + +0.1 2,177,196 - Dsui_2057 0.78 +0.0 2,177,196 - Dsui_2057 0.78 +0.1 2,177,231 - Dsui_2057 0.83 +0.3 2,177,299 + +0.1 2,177,483 - Dsui_2058 0.16 -0.6 2,177,519 - Dsui_2058 0.21 -0.2 2,177,700 - Dsui_2058 0.44 +0.3 2,177,905 + Dsui_2058 0.70 +1.1 2,178,017 - Dsui_2058 0.85 +0.4 2,178,144 - -0.2 2,178,146 + +0.1 2,178,200 + +1.1 2,178,299 - Dsui_2059 0.19 +0.7 2,178,299 - Dsui_2059 0.19 +0.3 2,178,334 + Dsui_2059 0.23 +0.1 2,178,707 - Dsui_2059 0.66 -0.1 2,178,728 - Dsui_2059 0.69 +0.3 2,178,883 + Dsui_2059 0.87 +0.1
Or see this region's nucleotide sequence