Strain Fitness in Dechlorosoma suillum PS around Dsui_1895

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1893 and Dsui_1894 are separated by 36 nucleotidesDsui_1894 and Dsui_1895 overlap by 4 nucleotidesDsui_1895 and Dsui_1896 are separated by 72 nucleotides Dsui_1893: Dsui_1893 - putative membrane protein, at 1,994,012 to 1,994,383 _1893 Dsui_1894: Dsui_1894 - E3 Ubiquitin ligase, at 1,994,420 to 1,995,325 _1894 Dsui_1895: Dsui_1895 - hypothetical protein, at 1,995,322 to 1,995,894 _1895 Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220 _1896 Position (kb) 1995 1996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1994.325 kb on + strand, within Dsui_1893at 1994.345 kb on - strand, within Dsui_1893at 1994.367 kb on + strandat 1994.441 kb on + strandat 1994.444 kb on - strandat 1994.444 kb on - strandat 1994.444 kb on - strandat 1994.444 kb on - strandat 1994.485 kb on - strandat 1994.593 kb on + strand, within Dsui_1894at 1994.778 kb on + strandat 1994.867 kb on - strand, within Dsui_1894at 1994.910 kb on - strand, within Dsui_1894at 1994.993 kb on + strand, within Dsui_1894at 1995.188 kb on - strand, within Dsui_1894at 1995.188 kb on - strand, within Dsui_1894at 1995.333 kb on - strandat 1995.565 kb on - strand, within Dsui_1895at 1995.565 kb on - strand, within Dsui_1895at 1995.605 kb on - strand, within Dsui_1895at 1995.653 kb on + strandat 1995.661 kb on - strand, within Dsui_1895at 1995.689 kb on + strandat 1995.742 kb on - strand, within Dsui_1895at 1995.813 kb on + strand, within Dsui_1895at 1995.829 kb on - strand, within Dsui_1895at 1995.934 kb on + strandat 1995.960 kb on + strandat 1995.992 kb on - strandat 1996.074 kb on + strandat 1996.082 kb on - strandat 1996.113 kb on + strand, within Dsui_1896at 1996.155 kb on - strand, within Dsui_1896at 1996.273 kb on - strand, within Dsui_1896at 1996.310 kb on + strand, within Dsui_1896at 1996.310 kb on + strand, within Dsui_1896at 1996.333 kb on - strandat 1996.340 kb on + strand, within Dsui_1896at 1996.362 kb on - strandat 1996.420 kb on + strand, within Dsui_1896at 1996.420 kb on + strand, within Dsui_1896at 1996.428 kb on - strandat 1996.448 kb on + strand, within Dsui_1896at 1996.477 kb on + strand, within Dsui_1896at 1996.530 kb on - strand, within Dsui_1896at 1996.552 kb on + strand, within Dsui_1896at 1996.552 kb on + strand, within Dsui_1896at 1996.862 kb on - strand, within Dsui_1896

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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1,994,325 + Dsui_1893 0.84 -2.3
1,994,345 - Dsui_1893 0.90 -0.6
1,994,367 + -0.0
1,994,441 + -0.0
1,994,444 - -0.6
1,994,444 - -0.0
1,994,444 - -0.0
1,994,444 - -0.6
1,994,485 - +1.0
1,994,593 + Dsui_1894 0.19 -0.0
1,994,778 + -0.0
1,994,867 - Dsui_1894 0.49 +1.0
1,994,910 - Dsui_1894 0.54 -1.6
1,994,993 + Dsui_1894 0.63 -2.0
1,995,188 - Dsui_1894 0.85 +1.0
1,995,188 - Dsui_1894 0.85 -0.0
1,995,333 - -2.0
1,995,565 - Dsui_1895 0.42 +1.0
1,995,565 - Dsui_1895 0.42 +0.0
1,995,605 - Dsui_1895 0.49 +0.0
1,995,653 + +1.0
1,995,661 - Dsui_1895 0.59 +1.0
1,995,689 + +1.0
1,995,742 - Dsui_1895 0.73 -2.4
1,995,813 + Dsui_1895 0.86 -1.0
1,995,829 - Dsui_1895 0.88 -1.8
1,995,934 + +1.0
1,995,960 + +1.0
1,995,992 - +0.0
1,996,074 + -0.6
1,996,082 - +1.0
1,996,113 + Dsui_1896 0.12 +1.0
1,996,155 - Dsui_1896 0.15 -0.6
1,996,273 - Dsui_1896 0.24 -1.0
1,996,310 + Dsui_1896 0.27 -0.3
1,996,310 + Dsui_1896 0.27 -1.1
1,996,333 - +1.0
1,996,340 + Dsui_1896 0.30 +1.0
1,996,362 - +0.0
1,996,420 + Dsui_1896 0.36 -1.0
1,996,420 + Dsui_1896 0.36 +2.0
1,996,428 - +1.0
1,996,448 + Dsui_1896 0.38 +0.0
1,996,477 + Dsui_1896 0.41 +0.1
1,996,530 - Dsui_1896 0.45 +0.0
1,996,552 + Dsui_1896 0.47 +0.0
1,996,552 + Dsui_1896 0.47 -3.1
1,996,862 - Dsui_1896 0.71 +0.0

Or see this region's nucleotide sequence