Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1886 and Dsui_1887 overlap by 4 nucleotides Dsui_1887 and Dsui_1888 overlap by 17 nucleotides Dsui_1888 and Dsui_1889 are separated by 1 nucleotides
Dsui_1886: Dsui_1886 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,984,376 to 1,985,689
_1886
Dsui_1887: Dsui_1887 - PAS domain S-box, at 1,985,686 to 1,987,896
_1887
Dsui_1888: Dsui_1888 - putative domain HDIG-containing protein, at 1,987,880 to 1,988,743
_1888
Dsui_1889: Dsui_1889 - hypothetical protein, at 1,988,745 to 1,989,068
_1889
Position (kb)
1985
1986
1987
1988 Strain fitness (log2 ratio)
-2
-1
0
1 at 1984.737 kb on + strand, within Dsui_1886 at 1984.809 kb on - strand, within Dsui_1886 at 1984.848 kb on - strand, within Dsui_1886 at 1984.929 kb on - strand, within Dsui_1886 at 1985.011 kb on + strand at 1985.162 kb on - strand, within Dsui_1886 at 1985.190 kb on - strand, within Dsui_1886 at 1985.190 kb on - strand, within Dsui_1886 at 1985.195 kb on + strand, within Dsui_1886 at 1985.293 kb on - strand, within Dsui_1886 at 1985.366 kb on + strand at 1985.445 kb on - strand, within Dsui_1886 at 1985.454 kb on - strand, within Dsui_1886 at 1985.459 kb on - strand, within Dsui_1886 at 1985.508 kb on - strand, within Dsui_1886 at 1985.508 kb on - strand, within Dsui_1886 at 1985.508 kb on - strand, within Dsui_1886 at 1985.648 kb on - strand at 1985.658 kb on - strand at 1985.738 kb on + strand at 1985.752 kb on - strand at 1985.814 kb on + strand at 1985.816 kb on - strand at 1985.822 kb on - strand at 1985.958 kb on + strand at 1985.961 kb on - strand, within Dsui_1887 at 1985.979 kb on - strand, within Dsui_1887 at 1986.012 kb on + strand at 1986.138 kb on - strand, within Dsui_1887 at 1986.264 kb on - strand, within Dsui_1887 at 1986.404 kb on - strand, within Dsui_1887 at 1986.420 kb on + strand, within Dsui_1887 at 1986.507 kb on + strand, within Dsui_1887 at 1986.515 kb on - strand, within Dsui_1887 at 1986.635 kb on + strand at 1986.675 kb on - strand, within Dsui_1887 at 1986.699 kb on + strand at 1986.725 kb on + strand at 1986.748 kb on + strand, within Dsui_1887 at 1986.753 kb on + strand, within Dsui_1887 at 1986.756 kb on - strand at 1986.915 kb on - strand, within Dsui_1887 at 1986.916 kb on - strand, within Dsui_1887 at 1987.076 kb on + strand at 1987.144 kb on - strand, within Dsui_1887 at 1987.395 kb on + strand, within Dsui_1887 at 1987.405 kb on + strand, within Dsui_1887 at 1987.428 kb on + strand at 1987.592 kb on - strand at 1987.656 kb on - strand, within Dsui_1887 at 1987.678 kb on + strand at 1987.689 kb on + strand at 1987.810 kb on + strand at 1987.838 kb on - strand at 1987.902 kb on - strand at 1987.935 kb on - strand at 1988.129 kb on - strand, within Dsui_1888 at 1988.160 kb on + strand at 1988.177 kb on + strand at 1988.184 kb on - strand, within Dsui_1888 at 1988.438 kb on + strand, within Dsui_1888 at 1988.440 kb on - strand, within Dsui_1888 at 1988.776 kb on + strand at 1988.794 kb on - strand, within Dsui_1889
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 1,984,737 + Dsui_1886 0.27 +1.0 1,984,809 - Dsui_1886 0.33 -0.6 1,984,848 - Dsui_1886 0.36 -1.0 1,984,929 - Dsui_1886 0.42 -2.7 1,985,011 + +1.0 1,985,162 - Dsui_1886 0.60 -0.9 1,985,190 - Dsui_1886 0.62 +0.0 1,985,190 - Dsui_1886 0.62 +0.0 1,985,195 + Dsui_1886 0.62 +1.0 1,985,293 - Dsui_1886 0.70 -1.6 1,985,366 + +1.0 1,985,445 - Dsui_1886 0.81 +0.0 1,985,454 - Dsui_1886 0.82 +0.0 1,985,459 - Dsui_1886 0.82 +0.0 1,985,508 - Dsui_1886 0.86 +0.0 1,985,508 - Dsui_1886 0.86 -1.6 1,985,508 - Dsui_1886 0.86 -1.4 1,985,648 - +0.4 1,985,658 - -0.2 1,985,738 + +1.0 1,985,752 - -0.5 1,985,814 + +1.0 1,985,816 - +0.0 1,985,822 - +0.0 1,985,958 + +1.0 1,985,961 - Dsui_1887 0.12 +1.0 1,985,979 - Dsui_1887 0.13 +1.0 1,986,012 + +1.0 1,986,138 - Dsui_1887 0.20 +1.0 1,986,264 - Dsui_1887 0.26 +1.0 1,986,404 - Dsui_1887 0.32 -2.0 1,986,420 + Dsui_1887 0.33 -1.8 1,986,507 + Dsui_1887 0.37 +1.0 1,986,515 - Dsui_1887 0.37 +1.0 1,986,635 + +0.0 1,986,675 - Dsui_1887 0.45 +1.0 1,986,699 + +1.0 1,986,725 + +1.0 1,986,748 + Dsui_1887 0.48 +0.0 1,986,753 + Dsui_1887 0.48 -1.6 1,986,756 - +1.0 1,986,915 - Dsui_1887 0.56 -1.6 1,986,916 - Dsui_1887 0.56 +1.0 1,987,076 + +1.0 1,987,144 - Dsui_1887 0.66 +1.0 1,987,395 + Dsui_1887 0.77 +1.0 1,987,405 + Dsui_1887 0.78 -1.6 1,987,428 + +1.0 1,987,592 - +1.0 1,987,656 - Dsui_1887 0.89 -0.6 1,987,678 + -0.0 1,987,689 + -2.0 1,987,810 + +1.0 1,987,838 - -0.6 1,987,902 - +1.0 1,987,935 - +1.0 1,988,129 - Dsui_1888 0.29 -0.6 1,988,160 + +1.0 1,988,177 + +1.0 1,988,184 - Dsui_1888 0.35 -1.6 1,988,438 + Dsui_1888 0.65 -0.6 1,988,440 - Dsui_1888 0.65 -0.6 1,988,776 + +1.0 1,988,794 - Dsui_1889 0.15 -0.6
Or see this region's nucleotide sequence