Strain Fitness in Dechlorosoma suillum PS around Dsui_1636

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1635 and Dsui_1636 are separated by 45 nucleotidesDsui_1636 and Dsui_1637 are separated by 120 nucleotides Dsui_1635: Dsui_1635 - putative exonuclease of the beta-lactamase fold involved in RNA processing, at 1,717,051 to 1,718,475 _1635 Dsui_1636: Dsui_1636 - poly(3-hydroxyalkanoate) synthetase, at 1,718,521 to 1,720,278 _1636 Dsui_1637: Dsui_1637 - 2-nitropropane dioxygenase-like enzyme, at 1,720,399 to 1,721,562 _1637 Position (kb) 1718 1719 1720 1721Strain fitness (log2 ratio) -2 -1 0 1at 1717.645 kb on - strand, within Dsui_1635at 1717.706 kb on - strand, within Dsui_1635at 1717.764 kb on + strand, within Dsui_1635at 1717.792 kb on - strand, within Dsui_1635at 1717.951 kb on - strand, within Dsui_1635at 1717.976 kb on + strand, within Dsui_1635at 1718.057 kb on - strand, within Dsui_1635at 1718.139 kb on - strand, within Dsui_1635at 1718.191 kb on + strand, within Dsui_1635at 1718.223 kb on + strand, within Dsui_1635at 1718.231 kb on - strand, within Dsui_1635at 1718.317 kb on + strand, within Dsui_1635at 1718.317 kb on + strand, within Dsui_1635at 1718.557 kb on - strandat 1718.583 kb on + strandat 1718.600 kb on + strandat 1718.656 kb on - strandat 1718.657 kb on + strandat 1718.845 kb on + strand, within Dsui_1636at 1718.870 kb on - strand, within Dsui_1636at 1719.013 kb on - strand, within Dsui_1636at 1719.036 kb on - strand, within Dsui_1636at 1719.059 kb on - strand, within Dsui_1636at 1719.087 kb on + strand, within Dsui_1636at 1719.163 kb on + strand, within Dsui_1636at 1719.208 kb on - strand, within Dsui_1636at 1719.209 kb on + strand, within Dsui_1636at 1719.217 kb on - strand, within Dsui_1636at 1719.291 kb on - strand, within Dsui_1636at 1719.305 kb on + strand, within Dsui_1636at 1719.313 kb on + strand, within Dsui_1636at 1719.320 kb on + strand, within Dsui_1636at 1719.393 kb on - strand, within Dsui_1636at 1719.395 kb on - strand, within Dsui_1636at 1719.450 kb on + strand, within Dsui_1636at 1719.458 kb on - strand, within Dsui_1636at 1719.501 kb on + strand, within Dsui_1636at 1719.551 kb on + strand, within Dsui_1636at 1719.559 kb on - strand, within Dsui_1636at 1719.744 kb on + strand, within Dsui_1636at 1719.797 kb on + strand, within Dsui_1636at 1719.824 kb on + strand, within Dsui_1636at 1720.079 kb on + strand, within Dsui_1636at 1720.079 kb on + strand, within Dsui_1636at 1720.178 kb on + strandat 1720.259 kb on + strandat 1720.259 kb on + strandat 1720.654 kb on + strand, within Dsui_1637at 1720.671 kb on + strand, within Dsui_1637at 1720.969 kb on - strand, within Dsui_1637at 1721.136 kb on - strand, within Dsui_1637

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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1,717,645 - Dsui_1635 0.42 -1.3
1,717,706 - Dsui_1635 0.46 +0.7
1,717,764 + Dsui_1635 0.50 -0.3
1,717,792 - Dsui_1635 0.52 -2.2
1,717,951 - Dsui_1635 0.63 -0.8
1,717,976 + Dsui_1635 0.65 -0.3
1,718,057 - Dsui_1635 0.71 -0.3
1,718,139 - Dsui_1635 0.76 -0.3
1,718,191 + Dsui_1635 0.80 -1.9
1,718,223 + Dsui_1635 0.82 +0.7
1,718,231 - Dsui_1635 0.83 -0.3
1,718,317 + Dsui_1635 0.89 +0.7
1,718,317 + Dsui_1635 0.89 +1.7
1,718,557 - +0.7
1,718,583 + +1.1
1,718,600 + -1.3
1,718,656 - -1.3
1,718,657 + +0.2
1,718,845 + Dsui_1636 0.18 -2.2
1,718,870 - Dsui_1636 0.20 -0.3
1,719,013 - Dsui_1636 0.28 +0.7
1,719,036 - Dsui_1636 0.29 +0.7
1,719,059 - Dsui_1636 0.31 +0.7
1,719,087 + Dsui_1636 0.32 -0.8
1,719,163 + Dsui_1636 0.37 -0.3
1,719,208 - Dsui_1636 0.39 -0.9
1,719,209 + Dsui_1636 0.39 -1.3
1,719,217 - Dsui_1636 0.40 -2.7
1,719,291 - Dsui_1636 0.44 -0.3
1,719,305 + Dsui_1636 0.45 -2.2
1,719,313 + Dsui_1636 0.45 +0.2
1,719,320 + Dsui_1636 0.45 +0.7
1,719,393 - Dsui_1636 0.50 +0.7
1,719,395 - Dsui_1636 0.50 +0.7
1,719,450 + Dsui_1636 0.53 -0.3
1,719,458 - Dsui_1636 0.53 -1.3
1,719,501 + Dsui_1636 0.56 -1.3
1,719,551 + Dsui_1636 0.59 -1.3
1,719,559 - Dsui_1636 0.59 -1.3
1,719,744 + Dsui_1636 0.70 -1.2
1,719,797 + Dsui_1636 0.73 -1.1
1,719,824 + Dsui_1636 0.74 -0.9
1,720,079 + Dsui_1636 0.89 -1.7
1,720,079 + Dsui_1636 0.89 +0.7
1,720,178 + +0.7
1,720,259 + -1.3
1,720,259 + -2.7
1,720,654 + Dsui_1637 0.22 -0.3
1,720,671 + Dsui_1637 0.23 -1.2
1,720,969 - Dsui_1637 0.49 -1.3
1,721,136 - Dsui_1637 0.63 -0.9

Or see this region's nucleotide sequence