Strain Fitness in Dechlorosoma suillum PS around Dsui_1563

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1562 and Dsui_1563 are separated by 20 nucleotidesDsui_1563 and Dsui_1564 are separated by 69 nucleotides Dsui_1562: Dsui_1562 - phosphoribulokinase, at 1,630,705 to 1,631,580 _1562 Dsui_1563: Dsui_1563 - fructose-1,6-bisphosphatase, at 1,631,601 to 1,632,599 _1563 Dsui_1564: Dsui_1564 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,632,669 to 1,636,514 _1564 Position (kb) 1631 1632 1633Strain fitness (log2 ratio) -2 -1 0 1at 1630.652 kb on + strandat 1630.670 kb on - strandat 1630.741 kb on + strandat 1630.810 kb on - strand, within Dsui_1562at 1630.843 kb on - strand, within Dsui_1562at 1630.849 kb on + strand, within Dsui_1562at 1630.890 kb on - strand, within Dsui_1562at 1630.931 kb on + strandat 1630.940 kb on - strand, within Dsui_1562at 1630.942 kb on + strand, within Dsui_1562at 1631.187 kb on + strand, within Dsui_1562at 1631.416 kb on + strand, within Dsui_1562at 1631.543 kb on - strandat 1632.654 kb on + strandat 1632.661 kb on + strandat 1632.662 kb on - strandat 1632.700 kb on - strandat 1632.832 kb on - strandat 1632.913 kb on + strandat 1632.923 kb on + strandat 1632.943 kb on + strandat 1632.946 kb on - strandat 1632.956 kb on - strandat 1633.191 kb on + strand, within Dsui_1564at 1633.513 kb on + strand, within Dsui_1564at 1633.586 kb on + strand, within Dsui_1564

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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1,630,652 + +0.7
1,630,670 - -2.5
1,630,741 + +0.7
1,630,810 - Dsui_1562 0.12 -1.6
1,630,843 - Dsui_1562 0.16 -0.2
1,630,849 + Dsui_1562 0.16 +0.7
1,630,890 - Dsui_1562 0.21 -0.5
1,630,931 + +0.7
1,630,940 - Dsui_1562 0.27 -0.9
1,630,942 + Dsui_1562 0.27 +0.7
1,631,187 + Dsui_1562 0.55 -0.3
1,631,416 + Dsui_1562 0.81 +0.7
1,631,543 - -0.4
1,632,654 + +0.7
1,632,661 + -0.3
1,632,662 - -0.1
1,632,700 - +0.3
1,632,832 - +0.7
1,632,913 + +0.7
1,632,923 + -0.3
1,632,943 + +0.7
1,632,946 - -0.0
1,632,956 - -0.5
1,633,191 + Dsui_1564 0.14 +0.7
1,633,513 + Dsui_1564 0.22 -0.3
1,633,586 + Dsui_1564 0.24 +0.7

Or see this region's nucleotide sequence