Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1137 and Dsui_1138 overlap by 4 nucleotides Dsui_1138 and Dsui_1139 overlap by 4 nucleotides Dsui_1139 and Dsui_1140 overlap by 4 nucleotides Dsui_1140 and Dsui_1141 are separated by 97 nucleotides
Dsui_1137: Dsui_1137 - chromate transporter, chromate ion transporter family, at 1,190,260 to 1,191,624
_1137
Dsui_1138: Dsui_1138 - hypothetical protein, at 1,191,621 to 1,192,016
_1138
Dsui_1139: Dsui_1139 - hypothetical protein, at 1,192,013 to 1,192,468
_1139
Dsui_1140: Dsui_1140 - arabinose efflux permease family protein, at 1,192,465 to 1,193,676
_1140
Dsui_1141: Dsui_1141 - hypothetical protein, at 1,193,774 to 1,194,388
_1141
Position (kb)
1192
1193
1194 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1191.524 kb on + strand at 1191.531 kb on - strand at 1191.541 kb on + strand at 1191.543 kb on - strand at 1191.657 kb on - strand at 1191.739 kb on - strand, within Dsui_1138 at 1191.741 kb on - strand at 1191.743 kb on + strand, within Dsui_1138 at 1191.773 kb on - strand, within Dsui_1138 at 1191.793 kb on + strand, within Dsui_1138 at 1191.796 kb on + strand, within Dsui_1138 at 1191.804 kb on - strand, within Dsui_1138 at 1191.856 kb on - strand, within Dsui_1138 at 1191.927 kb on - strand, within Dsui_1138 at 1191.960 kb on - strand, within Dsui_1138 at 1191.973 kb on + strand, within Dsui_1138 at 1192.026 kb on + strand at 1192.173 kb on + strand, within Dsui_1139 at 1192.174 kb on - strand, within Dsui_1139 at 1192.182 kb on - strand, within Dsui_1139 at 1192.206 kb on + strand, within Dsui_1139 at 1192.236 kb on - strand, within Dsui_1139 at 1192.241 kb on - strand, within Dsui_1139 at 1192.252 kb on + strand, within Dsui_1139 at 1192.327 kb on - strand, within Dsui_1139 at 1192.406 kb on + strand, within Dsui_1139 at 1192.450 kb on + strand at 1192.501 kb on - strand at 1192.704 kb on + strand, within Dsui_1140 at 1192.712 kb on + strand, within Dsui_1140 at 1192.779 kb on - strand, within Dsui_1140 at 1192.799 kb on + strand, within Dsui_1140 at 1192.952 kb on - strand, within Dsui_1140 at 1192.952 kb on - strand, within Dsui_1140 at 1192.952 kb on - strand, within Dsui_1140 at 1193.261 kb on + strand, within Dsui_1140 at 1193.264 kb on - strand, within Dsui_1140 at 1193.266 kb on + strand, within Dsui_1140 at 1193.444 kb on - strand, within Dsui_1140 at 1193.560 kb on - strand at 1193.560 kb on - strand at 1193.566 kb on + strand at 1193.609 kb on + strand at 1193.636 kb on + strand at 1193.636 kb on + strand at 1193.707 kb on - strand at 1193.707 kb on - strand at 1193.727 kb on + strand at 1193.765 kb on + strand at 1193.782 kb on - strand at 1193.799 kb on - strand at 1193.838 kb on + strand, within Dsui_1141 at 1193.838 kb on + strand, within Dsui_1141 at 1193.839 kb on + strand, within Dsui_1141 at 1193.846 kb on - strand, within Dsui_1141 at 1193.846 kb on - strand, within Dsui_1141 at 1193.847 kb on - strand, within Dsui_1141 at 1193.863 kb on + strand, within Dsui_1141 at 1193.927 kb on - strand, within Dsui_1141 at 1193.927 kb on - strand, within Dsui_1141 at 1193.931 kb on - strand, within Dsui_1141 at 1193.937 kb on - strand, within Dsui_1141 at 1193.995 kb on + strand, within Dsui_1141 at 1194.108 kb on - strand, within Dsui_1141 at 1194.108 kb on - strand, within Dsui_1141 at 1194.139 kb on + strand, within Dsui_1141 at 1194.194 kb on + strand, within Dsui_1141 at 1194.194 kb on + strand, within Dsui_1141 at 1194.202 kb on - strand, within Dsui_1141 at 1194.202 kb on - strand, within Dsui_1141 at 1194.202 kb on - strand, within Dsui_1141 at 1194.250 kb on + strand, within Dsui_1141 at 1194.250 kb on + strand, within Dsui_1141 at 1194.266 kb on - strand, within Dsui_1141 at 1194.273 kb on + strand, within Dsui_1141 at 1194.273 kb on + strand, within Dsui_1141 at 1194.281 kb on - strand, within Dsui_1141 at 1194.281 kb on - strand, within Dsui_1141 at 1194.284 kb on - strand, within Dsui_1141 at 1194.286 kb on - strand, within Dsui_1141 at 1194.369 kb on + strand at 1194.377 kb on - strand at 1194.382 kb on - strand at 1194.384 kb on + strand at 1194.384 kb on + strand at 1194.392 kb on - strand at 1194.405 kb on + strand at 1194.449 kb on - strand at 1194.459 kb on + strand at 1194.459 kb on + strand at 1194.496 kb on + strand at 1194.501 kb on + strand at 1194.509 kb on - strand at 1194.517 kb on - strand at 1194.549 kb on + strand at 1194.551 kb on + strand at 1194.593 kb on - strand at 1194.607 kb on + strand at 1194.616 kb on - strand at 1194.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 1,191,524 + -0.4 1,191,531 - +0.6 1,191,541 + -2.2 1,191,543 - +0.6 1,191,657 - +0.6 1,191,739 - Dsui_1138 0.30 -2.0 1,191,741 - +0.6 1,191,743 + Dsui_1138 0.31 -1.4 1,191,773 - Dsui_1138 0.38 +0.6 1,191,793 + Dsui_1138 0.43 +0.6 1,191,796 + Dsui_1138 0.44 -0.4 1,191,804 - Dsui_1138 0.46 +0.6 1,191,856 - Dsui_1138 0.59 -0.4 1,191,927 - Dsui_1138 0.77 -1.4 1,191,960 - Dsui_1138 0.86 -0.4 1,191,973 + Dsui_1138 0.89 +0.0 1,192,026 + -0.4 1,192,173 + Dsui_1139 0.35 -0.4 1,192,174 - Dsui_1139 0.35 +0.6 1,192,182 - Dsui_1139 0.37 -0.4 1,192,206 + Dsui_1139 0.42 +0.6 1,192,236 - Dsui_1139 0.49 -1.0 1,192,241 - Dsui_1139 0.50 +0.6 1,192,252 + Dsui_1139 0.52 -0.4 1,192,327 - Dsui_1139 0.69 +0.6 1,192,406 + Dsui_1139 0.86 +0.6 1,192,450 + +0.6 1,192,501 - -1.0 1,192,704 + Dsui_1140 0.20 -0.4 1,192,712 + Dsui_1140 0.20 +2.2 1,192,779 - Dsui_1140 0.26 -2.4 1,192,799 + Dsui_1140 0.28 -1.6 1,192,952 - Dsui_1140 0.40 -1.7 1,192,952 - Dsui_1140 0.40 -0.4 1,192,952 - Dsui_1140 0.40 +0.6 1,193,261 + Dsui_1140 0.66 -1.0 1,193,264 - Dsui_1140 0.66 -1.4 1,193,266 + Dsui_1140 0.66 -0.4 1,193,444 - Dsui_1140 0.81 -1.4 1,193,560 - -0.4 1,193,560 - -1.0 1,193,566 + -1.4 1,193,609 + -2.4 1,193,636 + -1.8 1,193,636 + -1.0 1,193,707 - +0.6 1,193,707 - -0.4 1,193,727 + +0.6 1,193,765 + +0.6 1,193,782 - -0.4 1,193,799 - -1.0 1,193,838 + Dsui_1141 0.10 -0.6 1,193,838 + Dsui_1141 0.10 +0.0 1,193,839 + Dsui_1141 0.11 -0.5 1,193,846 - Dsui_1141 0.12 +0.2 1,193,846 - Dsui_1141 0.12 +0.6 1,193,847 - Dsui_1141 0.12 +0.6 1,193,863 + Dsui_1141 0.14 -0.4 1,193,927 - Dsui_1141 0.25 -0.4 1,193,927 - Dsui_1141 0.25 +0.6 1,193,931 - Dsui_1141 0.26 -0.4 1,193,937 - Dsui_1141 0.27 -2.6 1,193,995 + Dsui_1141 0.36 +0.6 1,194,108 - Dsui_1141 0.54 +0.6 1,194,108 - Dsui_1141 0.54 -1.0 1,194,139 + Dsui_1141 0.59 +0.6 1,194,194 + Dsui_1141 0.68 -0.4 1,194,194 + Dsui_1141 0.68 +0.6 1,194,202 - Dsui_1141 0.70 +0.6 1,194,202 - Dsui_1141 0.70 -0.9 1,194,202 - Dsui_1141 0.70 +0.6 1,194,250 + Dsui_1141 0.77 -2.0 1,194,250 + Dsui_1141 0.77 +0.6 1,194,266 - Dsui_1141 0.80 +0.6 1,194,273 + Dsui_1141 0.81 -0.4 1,194,273 + Dsui_1141 0.81 +0.6 1,194,281 - Dsui_1141 0.82 -3.1 1,194,281 - Dsui_1141 0.82 -0.4 1,194,284 - Dsui_1141 0.83 -1.4 1,194,286 - Dsui_1141 0.83 +0.0 1,194,369 + +0.6 1,194,377 - +0.6 1,194,382 - -0.4 1,194,384 + -0.4 1,194,384 + -1.4 1,194,392 - -0.4 1,194,405 + -1.4 1,194,449 - -1.0 1,194,459 + -1.4 1,194,459 + -2.0 1,194,496 + -2.0 1,194,501 + -1.7 1,194,509 - -2.4 1,194,517 - +0.6 1,194,549 + -0.4 1,194,551 + +0.6 1,194,593 - -1.7 1,194,607 + +0.6 1,194,616 - +0.6 1,194,616 - -1.0
Or see this region's nucleotide sequence