Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1114 and Dsui_1115 are separated by 92 nucleotides Dsui_1115 and Dsui_1116 are separated by 131 nucleotides
Dsui_1114: Dsui_1114 - coenzyme F390 synthetase, at 1,161,201 to 1,162,433
_1114
Dsui_1115: Dsui_1115 - putative acyl-CoA transferase/carnitine dehydratase, at 1,162,526 to 1,163,692
_1115
Dsui_1116: Dsui_1116 - methyl-accepting chemotaxis protein, at 1,163,824 to 1,165,431
_1116
Position (kb)
1162
1163
1164 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1161.617 kb on - strand, within Dsui_1114 at 1161.687 kb on - strand, within Dsui_1114 at 1161.732 kb on + strand, within Dsui_1114 at 1161.802 kb on - strand, within Dsui_1114 at 1161.809 kb on - strand, within Dsui_1114 at 1161.809 kb on - strand, within Dsui_1114 at 1161.867 kb on - strand, within Dsui_1114 at 1161.886 kb on + strand, within Dsui_1114 at 1161.931 kb on + strand, within Dsui_1114 at 1161.938 kb on - strand, within Dsui_1114 at 1162.024 kb on - strand, within Dsui_1114 at 1162.129 kb on - strand, within Dsui_1114 at 1162.133 kb on + strand, within Dsui_1114 at 1162.247 kb on - strand, within Dsui_1114 at 1162.280 kb on - strand, within Dsui_1114 at 1162.280 kb on - strand, within Dsui_1114 at 1162.288 kb on - strand, within Dsui_1114 at 1162.352 kb on - strand at 1162.415 kb on + strand at 1162.482 kb on - strand at 1162.540 kb on + strand at 1162.565 kb on - strand at 1162.565 kb on - strand at 1162.596 kb on + strand at 1162.680 kb on + strand, within Dsui_1115 at 1162.690 kb on + strand, within Dsui_1115 at 1163.152 kb on - strand, within Dsui_1115 at 1163.365 kb on + strand, within Dsui_1115 at 1163.365 kb on + strand, within Dsui_1115 at 1163.392 kb on + strand, within Dsui_1115 at 1163.424 kb on - strand, within Dsui_1115 at 1163.427 kb on - strand, within Dsui_1115 at 1163.473 kb on - strand, within Dsui_1115 at 1163.476 kb on + strand, within Dsui_1115 at 1163.491 kb on - strand, within Dsui_1115 at 1163.540 kb on + strand, within Dsui_1115 at 1163.540 kb on + strand, within Dsui_1115 at 1163.551 kb on - strand, within Dsui_1115 at 1163.618 kb on + strand at 1163.676 kb on + strand at 1163.694 kb on - strand at 1163.711 kb on + strand at 1163.758 kb on - strand at 1163.782 kb on + strand at 1163.782 kb on + strand at 1163.840 kb on - strand at 1163.877 kb on + strand at 1163.928 kb on + strand at 1163.973 kb on + strand at 1164.016 kb on - strand, within Dsui_1116 at 1164.028 kb on - strand, within Dsui_1116 at 1164.032 kb on + strand, within Dsui_1116 at 1164.048 kb on - strand, within Dsui_1116 at 1164.093 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.171 kb on - strand, within Dsui_1116 at 1164.179 kb on + strand, within Dsui_1116 at 1164.442 kb on + strand, within Dsui_1116 at 1164.477 kb on + strand, within Dsui_1116 at 1164.546 kb on + strand, within Dsui_1116 at 1164.624 kb on + strand, within Dsui_1116 at 1164.632 kb on - strand, within Dsui_1116 at 1164.658 kb on + strand, within Dsui_1116
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 1,161,617 - Dsui_1114 0.34 -0.3 1,161,687 - Dsui_1114 0.39 +0.7 1,161,732 + Dsui_1114 0.43 +0.7 1,161,802 - Dsui_1114 0.49 +0.7 1,161,809 - Dsui_1114 0.49 +0.7 1,161,809 - Dsui_1114 0.49 -1.3 1,161,867 - Dsui_1114 0.54 -2.1 1,161,886 + Dsui_1114 0.56 +2.2 1,161,931 + Dsui_1114 0.59 +0.7 1,161,938 - Dsui_1114 0.60 +0.7 1,162,024 - Dsui_1114 0.67 +0.7 1,162,129 - Dsui_1114 0.75 +0.7 1,162,133 + Dsui_1114 0.76 -0.9 1,162,247 - Dsui_1114 0.85 -0.3 1,162,280 - Dsui_1114 0.88 +0.7 1,162,280 - Dsui_1114 0.88 +0.7 1,162,288 - Dsui_1114 0.88 +0.7 1,162,352 - +0.7 1,162,415 + -1.3 1,162,482 - -1.3 1,162,540 + +0.7 1,162,565 - -0.3 1,162,565 - -0.3 1,162,596 + +0.7 1,162,680 + Dsui_1115 0.13 +0.7 1,162,690 + Dsui_1115 0.14 -0.9 1,163,152 - Dsui_1115 0.54 -1.3 1,163,365 + Dsui_1115 0.72 -1.3 1,163,365 + Dsui_1115 0.72 +0.7 1,163,392 + Dsui_1115 0.74 +0.7 1,163,424 - Dsui_1115 0.77 -0.3 1,163,427 - Dsui_1115 0.77 -0.2 1,163,473 - Dsui_1115 0.81 -0.3 1,163,476 + Dsui_1115 0.81 -4.0 1,163,491 - Dsui_1115 0.83 -1.3 1,163,540 + Dsui_1115 0.87 +0.7 1,163,540 + Dsui_1115 0.87 -0.3 1,163,551 - Dsui_1115 0.88 +0.7 1,163,618 + -1.7 1,163,676 + -0.3 1,163,694 - -1.3 1,163,711 + -0.3 1,163,758 - -0.9 1,163,782 + +0.1 1,163,782 + -0.2 1,163,840 - +0.7 1,163,877 + -0.8 1,163,928 + -0.2 1,163,973 + -0.2 1,164,016 - Dsui_1116 0.12 +0.7 1,164,028 - Dsui_1116 0.13 +0.7 1,164,032 + Dsui_1116 0.13 -0.0 1,164,048 - Dsui_1116 0.14 +0.7 1,164,093 - Dsui_1116 0.17 +1.2 1,164,098 - Dsui_1116 0.17 +0.7 1,164,098 - Dsui_1116 0.17 -0.3 1,164,098 - Dsui_1116 0.17 -0.3 1,164,171 - Dsui_1116 0.22 -0.9 1,164,179 + Dsui_1116 0.22 -0.1 1,164,442 + Dsui_1116 0.38 +0.0 1,164,477 + Dsui_1116 0.41 -0.3 1,164,546 + Dsui_1116 0.45 +0.1 1,164,624 + Dsui_1116 0.50 -0.1 1,164,632 - Dsui_1116 0.50 -0.3 1,164,658 + Dsui_1116 0.52 -0.2
Or see this region's nucleotide sequence