Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1102 and Dsui_1103 overlap by 10 nucleotides Dsui_1103 and Dsui_1104 are separated by 146 nucleotides Dsui_1104 and Dsui_1105 are separated by 64 nucleotides
Dsui_1102: Dsui_1102 - hypothetical protein, at 1,145,895 to 1,146,902
_1102
Dsui_1103: Dsui_1103 - DNA-binding domain-containing protein, AraC-type, at 1,146,893 to 1,147,978
_1103
Dsui_1104: Dsui_1104 - putative thioesterase, at 1,148,125 to 1,148,586
_1104
Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932
_1105
Position (kb)
1146
1147
1148 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1145.934 kb on - strand at 1145.996 kb on - strand, within Dsui_1102 at 1146.123 kb on - strand, within Dsui_1102 at 1146.170 kb on + strand, within Dsui_1102 at 1146.175 kb on + strand, within Dsui_1102 at 1146.175 kb on + strand, within Dsui_1102 at 1146.183 kb on - strand, within Dsui_1102 at 1146.185 kb on + strand, within Dsui_1102 at 1146.206 kb on + strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.329 kb on + strand, within Dsui_1102 at 1146.382 kb on - strand, within Dsui_1102 at 1146.681 kb on + strand, within Dsui_1102 at 1146.683 kb on + strand, within Dsui_1102 at 1146.691 kb on - strand, within Dsui_1102 at 1146.725 kb on - strand, within Dsui_1102 at 1146.728 kb on + strand, within Dsui_1102 at 1146.736 kb on - strand, within Dsui_1102 at 1146.736 kb on - strand, within Dsui_1102 at 1146.753 kb on - strand, within Dsui_1102 at 1146.826 kb on - strand at 1146.831 kb on - strand at 1146.851 kb on - strand at 1146.877 kb on + strand at 1146.915 kb on - strand at 1147.219 kb on + strand, within Dsui_1103 at 1147.261 kb on + strand at 1147.398 kb on + strand, within Dsui_1103 at 1147.398 kb on + strand at 1147.403 kb on + strand, within Dsui_1103 at 1147.403 kb on + strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.411 kb on - strand, within Dsui_1103 at 1147.416 kb on - strand, within Dsui_1103 at 1147.462 kb on + strand, within Dsui_1103 at 1147.558 kb on + strand, within Dsui_1103 at 1147.566 kb on - strand, within Dsui_1103 at 1147.585 kb on - strand, within Dsui_1103 at 1147.639 kb on + strand, within Dsui_1103 at 1147.781 kb on - strand, within Dsui_1103 at 1147.782 kb on - strand, within Dsui_1103 at 1147.788 kb on + strand at 1147.873 kb on - strand at 1147.885 kb on + strand at 1147.885 kb on + strand at 1147.893 kb on - strand at 1147.916 kb on + strand at 1147.921 kb on + strand at 1147.973 kb on + strand at 1147.976 kb on - strand at 1147.981 kb on - strand at 1148.224 kb on + strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.244 kb on + strand, within Dsui_1104 at 1148.287 kb on - strand at 1148.344 kb on + strand, within Dsui_1104 at 1148.405 kb on + strand, within Dsui_1104 at 1148.424 kb on + strand, within Dsui_1104 at 1148.438 kb on - strand, within Dsui_1104 at 1148.708 kb on + strand at 1148.758 kb on - strand at 1148.787 kb on + strand at 1148.795 kb on - strand at 1148.843 kb on + strand at 1148.885 kb on - strand at 1148.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 1,145,934 - +0.2 1,145,996 - Dsui_1102 0.10 -0.5 1,146,123 - Dsui_1102 0.23 -1.5 1,146,170 + Dsui_1102 0.27 -0.3 1,146,175 + Dsui_1102 0.28 -0.0 1,146,175 + Dsui_1102 0.28 -0.1 1,146,183 - Dsui_1102 0.29 -0.9 1,146,185 + Dsui_1102 0.29 +0.1 1,146,206 + Dsui_1102 0.31 +0.3 1,146,214 - Dsui_1102 0.32 -1.6 1,146,214 - Dsui_1102 0.32 -0.9 1,146,214 - Dsui_1102 0.32 +0.7 1,146,214 - Dsui_1102 0.32 +0.7 1,146,329 + Dsui_1102 0.43 -0.3 1,146,382 - Dsui_1102 0.48 -1.6 1,146,681 + Dsui_1102 0.78 +0.1 1,146,683 + Dsui_1102 0.78 -0.7 1,146,691 - Dsui_1102 0.79 -1.3 1,146,725 - Dsui_1102 0.82 +0.7 1,146,728 + Dsui_1102 0.83 -0.5 1,146,736 - Dsui_1102 0.83 -1.3 1,146,736 - Dsui_1102 0.83 -0.6 1,146,753 - Dsui_1102 0.85 +0.7 1,146,826 - -2.6 1,146,831 - -0.5 1,146,851 - -3.2 1,146,877 + -0.3 1,146,915 - -1.1 1,147,219 + Dsui_1103 0.30 -1.6 1,147,261 + +1.7 1,147,398 + Dsui_1103 0.47 +0.7 1,147,398 + +0.7 1,147,403 + Dsui_1103 0.47 +2.3 1,147,403 + Dsui_1103 0.47 -1.3 1,147,406 - Dsui_1103 0.47 -0.3 1,147,406 - Dsui_1103 0.47 -0.1 1,147,406 - Dsui_1103 0.47 +0.1 1,147,411 - Dsui_1103 0.48 +0.5 1,147,416 - Dsui_1103 0.48 -0.1 1,147,462 + Dsui_1103 0.52 +0.7 1,147,558 + Dsui_1103 0.61 -0.9 1,147,566 - Dsui_1103 0.62 -0.1 1,147,585 - Dsui_1103 0.64 -0.0 1,147,639 + Dsui_1103 0.69 -1.9 1,147,781 - Dsui_1103 0.82 +0.1 1,147,782 - Dsui_1103 0.82 -0.0 1,147,788 + +0.7 1,147,873 - +0.6 1,147,885 + +0.7 1,147,885 + +0.7 1,147,893 - -0.2 1,147,916 + -1.3 1,147,921 + +0.7 1,147,973 + +0.7 1,147,976 - -1.1 1,147,981 - -2.1 1,148,224 + Dsui_1104 0.21 +0.7 1,148,232 - Dsui_1104 0.23 +0.7 1,148,232 - Dsui_1104 0.23 +0.7 1,148,232 - Dsui_1104 0.23 -1.9 1,148,244 + Dsui_1104 0.26 +0.7 1,148,287 - -1.3 1,148,344 + Dsui_1104 0.47 -0.9 1,148,405 + Dsui_1104 0.61 -0.3 1,148,424 + Dsui_1104 0.65 -2.1 1,148,438 - Dsui_1104 0.68 -0.9 1,148,708 + -0.9 1,148,758 - +0.7 1,148,787 + -0.9 1,148,795 - -1.6 1,148,843 + -0.9 1,148,885 - +0.7 1,148,950 + -0.3
Or see this region's nucleotide sequence