Strain Fitness in Dechlorosoma suillum PS around Dsui_0929

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0928 and Dsui_0929 are separated by 20 nucleotidesDsui_0929 and Dsui_0930 are separated by 277 nucleotides Dsui_0928: Dsui_0928 - cytochrome c oxidase accessory protein FixG, at 956,018 to 957,433 _0928 Dsui_0929: Dsui_0929 - Zn-dependent hydrolase, glyoxylase, at 957,454 to 958,170 _0929 Dsui_0930: Dsui_0930 - transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 958,448 to 959,797 _0930 Position (kb) 957 958 959Strain fitness (log2 ratio) -3 -2 -1 0 1at 956.500 kb on - strand, within Dsui_0928at 956.670 kb on + strandat 956.692 kb on - strand, within Dsui_0928at 956.719 kb on + strand, within Dsui_0928at 956.817 kb on - strand, within Dsui_0928at 956.847 kb on - strand, within Dsui_0928at 956.888 kb on - strandat 956.894 kb on + strand, within Dsui_0928at 956.950 kb on + strand, within Dsui_0928at 957.001 kb on - strand, within Dsui_0928at 957.067 kb on + strandat 957.100 kb on - strand, within Dsui_0928at 957.172 kb on + strand, within Dsui_0928at 957.204 kb on - strand, within Dsui_0928at 957.210 kb on + strand, within Dsui_0928at 957.231 kb on + strand, within Dsui_0928at 957.236 kb on + strand, within Dsui_0928at 957.330 kb on + strandat 957.335 kb on + strandat 957.343 kb on - strandat 957.368 kb on - strandat 957.373 kb on + strandat 957.420 kb on - strandat 957.420 kb on - strandat 957.420 kb on - strandat 957.421 kb on + strandat 957.429 kb on + strandat 957.458 kb on - strandat 957.489 kb on + strandat 957.497 kb on - strandat 957.497 kb on - strandat 957.522 kb on - strandat 957.559 kb on + strand, within Dsui_0929at 957.559 kb on + strand, within Dsui_0929at 957.595 kb on + strand, within Dsui_0929at 957.603 kb on - strand, within Dsui_0929at 957.712 kb on + strand, within Dsui_0929at 957.749 kb on - strand, within Dsui_0929at 957.792 kb on - strand, within Dsui_0929at 957.805 kb on + strand, within Dsui_0929at 957.805 kb on + strand, within Dsui_0929at 957.831 kb on + strandat 957.957 kb on + strand, within Dsui_0929at 957.963 kb on + strand, within Dsui_0929at 957.963 kb on + strand, within Dsui_0929at 957.974 kb on + strand, within Dsui_0929at 957.991 kb on + strand, within Dsui_0929at 958.078 kb on - strandat 958.123 kb on + strandat 958.206 kb on + strandat 958.468 kb on + strandat 958.477 kb on + strandat 958.485 kb on - strandat 958.636 kb on + strand, within Dsui_0930at 958.677 kb on + strand, within Dsui_0930at 958.685 kb on - strand, within Dsui_0930at 958.693 kb on + strand, within Dsui_0930at 958.788 kb on - strand, within Dsui_0930at 958.921 kb on + strand, within Dsui_0930at 959.064 kb on - strand, within Dsui_0930at 959.064 kb on - strand, within Dsui_0930

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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956,500 - Dsui_0928 0.34 +0.8
956,670 + +0.8
956,692 - Dsui_0928 0.48 -0.2
956,719 + Dsui_0928 0.50 -0.2
956,817 - Dsui_0928 0.56 -2.0
956,847 - Dsui_0928 0.59 -2.5
956,888 - +0.8
956,894 + Dsui_0928 0.62 +0.8
956,950 + Dsui_0928 0.66 +0.8
957,001 - Dsui_0928 0.69 -1.8
957,067 + +0.8
957,100 - Dsui_0928 0.76 -0.2
957,172 + Dsui_0928 0.81 +0.8
957,204 - Dsui_0928 0.84 +0.8
957,210 + Dsui_0928 0.84 -1.4
957,231 + Dsui_0928 0.86 +0.8
957,236 + Dsui_0928 0.86 -0.2
957,330 + +0.8
957,335 + -0.8
957,343 - +0.8
957,368 - -0.2
957,373 + -0.8
957,420 - +0.8
957,420 - +0.8
957,420 - -1.5
957,421 + +0.8
957,429 + -2.9
957,458 - -0.8
957,489 + -1.5
957,497 - -1.2
957,497 - +0.8
957,522 - +0.8
957,559 + Dsui_0929 0.15 -0.8
957,559 + Dsui_0929 0.15 -0.8
957,595 + Dsui_0929 0.20 -0.2
957,603 - Dsui_0929 0.21 -0.8
957,712 + Dsui_0929 0.36 -0.2
957,749 - Dsui_0929 0.41 -0.2
957,792 - Dsui_0929 0.47 +0.8
957,805 + Dsui_0929 0.49 -0.8
957,805 + Dsui_0929 0.49 -0.2
957,831 + +0.8
957,957 + Dsui_0929 0.70 -1.5
957,963 + Dsui_0929 0.71 -0.2
957,963 + Dsui_0929 0.71 -1.2
957,974 + Dsui_0929 0.73 -1.2
957,991 + Dsui_0929 0.75 -0.2
958,078 - +0.8
958,123 + -0.2
958,206 + -2.8
958,468 + -0.9
958,477 + -0.2
958,485 - +0.8
958,636 + Dsui_0930 0.14 +0.3
958,677 + Dsui_0930 0.17 +0.1
958,685 - Dsui_0930 0.18 -0.2
958,693 + Dsui_0930 0.18 -0.4
958,788 - Dsui_0930 0.25 -1.5
958,921 + Dsui_0930 0.35 +0.1
959,064 - Dsui_0930 0.46 -0.8
959,064 - Dsui_0930 0.46 +0.8

Or see this region's nucleotide sequence