Strain Fitness in Dechlorosoma suillum PS around Dsui_0913

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0912 and Dsui_0913 are separated by 58 nucleotidesDsui_0913 and Dsui_0914 are separated by 5 nucleotides Dsui_0912: Dsui_0912 - hypothetical protein, at 932,956 to 935,460 _0912 Dsui_0913: Dsui_0913 - hypothetical protein, at 935,519 to 935,998 _0913 Dsui_0914: Dsui_0914 - hypothetical protein, at 936,004 to 937,614 _0914 Position (kb) 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 934.549 kb on + strand, within Dsui_0912at 934.557 kb on + strand, within Dsui_0912at 934.589 kb on - strand, within Dsui_0912at 934.615 kb on + strand, within Dsui_0912at 934.616 kb on + strand, within Dsui_0912at 934.625 kb on - strand, within Dsui_0912at 934.659 kb on - strand, within Dsui_0912at 934.698 kb on + strand, within Dsui_0912at 934.706 kb on - strand, within Dsui_0912at 934.706 kb on - strand, within Dsui_0912at 934.719 kb on + strand, within Dsui_0912at 934.726 kb on + strand, within Dsui_0912at 934.726 kb on + strand, within Dsui_0912at 934.726 kb on + strand, within Dsui_0912at 934.734 kb on + strand, within Dsui_0912at 934.734 kb on - strand, within Dsui_0912at 934.734 kb on - strand, within Dsui_0912at 934.734 kb on - strand, within Dsui_0912at 934.734 kb on - strand, within Dsui_0912at 934.734 kb on - strand, within Dsui_0912at 934.734 kb on - strand, within Dsui_0912at 934.736 kb on - strand, within Dsui_0912at 934.755 kb on + strand, within Dsui_0912at 934.782 kb on + strand, within Dsui_0912at 934.883 kb on + strand, within Dsui_0912at 934.964 kb on - strand, within Dsui_0912at 934.977 kb on - strand, within Dsui_0912at 935.024 kb on - strand, within Dsui_0912at 935.033 kb on + strand, within Dsui_0912at 935.038 kb on + strand, within Dsui_0912at 935.046 kb on - strand, within Dsui_0912at 935.046 kb on - strand, within Dsui_0912at 935.046 kb on - strand, within Dsui_0912at 935.107 kb on + strand, within Dsui_0912at 935.114 kb on - strand, within Dsui_0912at 935.134 kb on + strand, within Dsui_0912at 935.139 kb on + strand, within Dsui_0912at 935.139 kb on + strand, within Dsui_0912at 935.147 kb on - strand, within Dsui_0912at 935.147 kb on - strand, within Dsui_0912at 935.213 kb on - strandat 935.244 kb on + strandat 935.264 kb on + strandat 935.264 kb on + strandat 935.264 kb on + strandat 935.356 kb on + strandat 935.357 kb on + strandat 935.377 kb on - strandat 935.381 kb on + strandat 935.389 kb on - strandat 935.442 kb on - strandat 935.462 kb on + strandat 935.463 kb on - strandat 935.474 kb on - strandat 935.475 kb on - strandat 935.484 kb on - strandat 935.494 kb on + strandat 935.506 kb on + strandat 935.559 kb on + strandat 935.559 kb on + strandat 935.567 kb on - strand, within Dsui_0913at 935.587 kb on - strand, within Dsui_0913at 935.608 kb on + strand, within Dsui_0913at 935.608 kb on + strand, within Dsui_0913at 935.608 kb on + strand, within Dsui_0913at 935.608 kb on + strand, within Dsui_0913at 935.616 kb on - strand, within Dsui_0913at 935.679 kb on + strand, within Dsui_0913at 935.679 kb on + strand, within Dsui_0913at 935.679 kb on + strand, within Dsui_0913at 935.679 kb on + strand, within Dsui_0913at 935.679 kb on + strand, within Dsui_0913at 935.679 kb on + strand, within Dsui_0913at 935.687 kb on - strand, within Dsui_0913at 935.687 kb on - strand, within Dsui_0913at 935.687 kb on - strand, within Dsui_0913at 935.687 kb on - strand, within Dsui_0913at 935.698 kb on - strand, within Dsui_0913at 935.722 kb on - strand, within Dsui_0913at 935.774 kb on - strand, within Dsui_0913at 935.804 kb on + strand, within Dsui_0913at 935.850 kb on + strand, within Dsui_0913at 935.850 kb on + strand, within Dsui_0913at 935.858 kb on - strand, within Dsui_0913at 935.860 kb on + strand, within Dsui_0913at 935.877 kb on - strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.901 kb on + strand, within Dsui_0913at 935.904 kb on - strand, within Dsui_0913at 935.906 kb on + strand, within Dsui_0913at 935.906 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.909 kb on - strand, within Dsui_0913at 935.930 kb on + strand, within Dsui_0913at 935.998 kb on + strandat 936.065 kb on + strandat 936.073 kb on - strandat 936.073 kb on - strandat 936.074 kb on - strandat 936.116 kb on + strandat 936.116 kb on + strandat 936.116 kb on + strandat 936.116 kb on + strandat 936.116 kb on + strandat 936.124 kb on - strandat 936.124 kb on - strandat 936.124 kb on - strandat 936.124 kb on - strandat 936.124 kb on - strandat 936.135 kb on + strandat 936.144 kb on - strandat 936.144 kb on - strandat 936.146 kb on + strandat 936.154 kb on - strandat 936.154 kb on - strandat 936.154 kb on - strandat 936.154 kb on - strandat 936.164 kb on - strandat 936.177 kb on + strand, within Dsui_0914at 936.185 kb on - strand, within Dsui_0914at 936.198 kb on + strand, within Dsui_0914at 936.198 kb on + strand, within Dsui_0914at 936.283 kb on - strand, within Dsui_0914at 936.294 kb on + strand, within Dsui_0914at 936.294 kb on + strand, within Dsui_0914at 936.294 kb on + strand, within Dsui_0914at 936.294 kb on + strand, within Dsui_0914at 936.294 kb on - strand, within Dsui_0914at 936.295 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on + strand, within Dsui_0914at 936.302 kb on - strand, within Dsui_0914at 936.310 kb on - strand, within Dsui_0914at 936.310 kb on - strand, within Dsui_0914at 936.310 kb on - strand, within Dsui_0914at 936.310 kb on - strand, within Dsui_0914at 936.312 kb on + strand, within Dsui_0914at 936.315 kb on - strand, within Dsui_0914at 936.332 kb on + strand, within Dsui_0914at 936.332 kb on - strand, within Dsui_0914at 936.337 kb on + strand, within Dsui_0914at 936.350 kb on - strand, within Dsui_0914at 936.355 kb on - strand, within Dsui_0914at 936.408 kb on + strand, within Dsui_0914at 936.416 kb on - strand, within Dsui_0914at 936.420 kb on + strand, within Dsui_0914at 936.420 kb on + strand, within Dsui_0914at 936.420 kb on + strand, within Dsui_0914at 936.425 kb on + strand, within Dsui_0914at 936.428 kb on - strand, within Dsui_0914at 936.475 kb on + strand, within Dsui_0914at 936.522 kb on + strand, within Dsui_0914at 936.522 kb on - strand, within Dsui_0914at 936.598 kb on - strand, within Dsui_0914at 936.605 kb on - strand, within Dsui_0914at 936.610 kb on + strand, within Dsui_0914at 936.615 kb on + strand, within Dsui_0914at 936.615 kb on + strand, within Dsui_0914at 936.615 kb on + strand, within Dsui_0914at 936.623 kb on - strand, within Dsui_0914at 936.623 kb on - strand, within Dsui_0914at 936.657 kb on + strand, within Dsui_0914at 936.665 kb on - strand, within Dsui_0914at 936.669 kb on + strand, within Dsui_0914at 936.682 kb on + strand, within Dsui_0914at 936.769 kb on + strand, within Dsui_0914at 936.805 kb on + strand, within Dsui_0914at 936.810 kb on + strand, within Dsui_0914at 936.829 kb on - strand, within Dsui_0914at 936.870 kb on + strand, within Dsui_0914at 936.878 kb on - strand, within Dsui_0914at 936.886 kb on + strand, within Dsui_0914at 936.894 kb on + strand, within Dsui_0914at 936.910 kb on + strand, within Dsui_0914at 936.910 kb on + strand, within Dsui_0914at 936.918 kb on - strand, within Dsui_0914at 936.930 kb on - strand, within Dsui_0914

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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934,549 + Dsui_0912 0.64 +0.1
934,557 + Dsui_0912 0.64 -0.4
934,589 - Dsui_0912 0.65 -2.1
934,615 + Dsui_0912 0.66 -0.3
934,616 + Dsui_0912 0.66 -0.5
934,625 - Dsui_0912 0.67 -1.9
934,659 - Dsui_0912 0.68 +0.1
934,698 + Dsui_0912 0.70 -0.0
934,706 - Dsui_0912 0.70 +0.7
934,706 - Dsui_0912 0.70 +0.7
934,719 + Dsui_0912 0.70 -0.2
934,726 + Dsui_0912 0.71 -0.3
934,726 + Dsui_0912 0.71 -0.3
934,726 + Dsui_0912 0.71 +0.7
934,734 + Dsui_0912 0.71 +0.4
934,734 - Dsui_0912 0.71 +0.7
934,734 - Dsui_0912 0.71 -1.9
934,734 - Dsui_0912 0.71 +0.7
934,734 - Dsui_0912 0.71 -0.3
934,734 - Dsui_0912 0.71 +0.7
934,734 - Dsui_0912 0.71 +0.7
934,736 - Dsui_0912 0.71 -0.3
934,755 + Dsui_0912 0.72 +0.5
934,782 + Dsui_0912 0.73 -0.8
934,883 + Dsui_0912 0.77 -0.4
934,964 - Dsui_0912 0.80 +0.1
934,977 - Dsui_0912 0.81 -0.3
935,024 - Dsui_0912 0.83 -0.0
935,033 + Dsui_0912 0.83 -0.3
935,038 + Dsui_0912 0.83 -0.3
935,046 - Dsui_0912 0.83 +2.3
935,046 - Dsui_0912 0.83 +0.1
935,046 - Dsui_0912 0.83 +0.7
935,107 + Dsui_0912 0.86 -0.1
935,114 - Dsui_0912 0.86 -0.9
935,134 + Dsui_0912 0.87 +2.1
935,139 + Dsui_0912 0.87 -0.2
935,139 + Dsui_0912 0.87 -0.2
935,147 - Dsui_0912 0.87 -0.3
935,147 - Dsui_0912 0.87 -0.9
935,213 - -0.9
935,244 + -0.0
935,264 + -0.4
935,264 + -0.3
935,264 + +0.4
935,356 + -1.0
935,357 + -0.1
935,377 - -0.3
935,381 + -0.4
935,389 - +0.7
935,442 - +0.7
935,462 + +0.7
935,463 - -0.9
935,474 - -0.3
935,475 - -0.3
935,484 - -0.9
935,494 + -0.5
935,506 + -0.8
935,559 + -1.9
935,559 + +0.7
935,567 - Dsui_0913 0.10 -0.3
935,587 - Dsui_0913 0.14 +0.7
935,608 + Dsui_0913 0.19 -0.6
935,608 + Dsui_0913 0.19 -0.9
935,608 + Dsui_0913 0.19 -0.8
935,608 + Dsui_0913 0.19 -0.6
935,616 - Dsui_0913 0.20 -1.3
935,679 + Dsui_0913 0.33 -0.7
935,679 + Dsui_0913 0.33 -1.8
935,679 + Dsui_0913 0.33 +0.7
935,679 + Dsui_0913 0.33 -0.5
935,679 + Dsui_0913 0.33 -0.4
935,679 + Dsui_0913 0.33 -1.4
935,687 - Dsui_0913 0.35 -0.9
935,687 - Dsui_0913 0.35 -0.9
935,687 - Dsui_0913 0.35 +0.7
935,687 - Dsui_0913 0.35 +0.7
935,698 - Dsui_0913 0.37 +0.7
935,722 - Dsui_0913 0.42 +0.7
935,774 - Dsui_0913 0.53 -1.3
935,804 + Dsui_0913 0.59 +0.5
935,850 + Dsui_0913 0.69 -1.9
935,850 + Dsui_0913 0.69 -0.7
935,858 - Dsui_0913 0.71 -3.0
935,860 + Dsui_0913 0.71 -0.2
935,877 - Dsui_0913 0.75 -1.3
935,901 + Dsui_0913 0.80 -1.2
935,901 + Dsui_0913 0.80 -0.5
935,901 + Dsui_0913 0.80 -1.1
935,901 + Dsui_0913 0.80 -0.3
935,901 + Dsui_0913 0.80 +1.5
935,901 + Dsui_0913 0.80 -1.3
935,901 + Dsui_0913 0.80 -0.7
935,901 + Dsui_0913 0.80 -0.5
935,901 + Dsui_0913 0.80 +0.5
935,901 + Dsui_0913 0.80 -0.1
935,901 + Dsui_0913 0.80 +0.4
935,904 - Dsui_0913 0.80 -1.6
935,906 + Dsui_0913 0.81 -0.3
935,906 - Dsui_0913 0.81 -0.3
935,909 - Dsui_0913 0.81 -0.9
935,909 - Dsui_0913 0.81 +0.7
935,909 - Dsui_0913 0.81 -2.9
935,909 - Dsui_0913 0.81 -0.3
935,909 - Dsui_0913 0.81 +0.7
935,909 - Dsui_0913 0.81 +0.7
935,909 - Dsui_0913 0.81 +0.7
935,909 - Dsui_0913 0.81 -0.9
935,909 - Dsui_0913 0.81 +0.7
935,930 + Dsui_0913 0.86 -1.1
935,998 + -0.1
936,065 + +0.1
936,073 - +0.7
936,073 - -0.3
936,074 - +0.7
936,116 + -0.9
936,116 + -0.9
936,116 + -1.4
936,116 + +0.7
936,116 + -2.1
936,124 - -2.1
936,124 - -0.3
936,124 - +0.7
936,124 - +0.7
936,124 - +0.7
936,135 + +0.7
936,144 - +0.7
936,144 - +0.7
936,146 + +0.4
936,154 - +0.7
936,154 - -1.6
936,154 - +0.7
936,154 - +0.7
936,164 - -0.3
936,177 + Dsui_0914 0.11 -0.7
936,185 - Dsui_0914 0.11 -0.9
936,198 + Dsui_0914 0.12 -0.9
936,198 + Dsui_0914 0.12 +0.7
936,283 - Dsui_0914 0.17 +0.7
936,294 + Dsui_0914 0.18 +0.7
936,294 + Dsui_0914 0.18 -1.7
936,294 + Dsui_0914 0.18 +0.7
936,294 + Dsui_0914 0.18 -0.3
936,294 - Dsui_0914 0.18 +0.7
936,295 + Dsui_0914 0.18 -0.3
936,302 + Dsui_0914 0.18 -0.3
936,302 + Dsui_0914 0.18 -2.3
936,302 + Dsui_0914 0.18 +0.7
936,302 + Dsui_0914 0.18 -0.9
936,302 + Dsui_0914 0.18 -0.3
936,302 + Dsui_0914 0.18 +0.7
936,302 + Dsui_0914 0.18 +0.7
936,302 + Dsui_0914 0.18 -1.6
936,302 + Dsui_0914 0.18 +0.7
936,302 + Dsui_0914 0.18 -0.3
936,302 - Dsui_0914 0.18 -1.3
936,310 - Dsui_0914 0.19 -0.9
936,310 - Dsui_0914 0.19 +0.7
936,310 - Dsui_0914 0.19 +0.7
936,310 - Dsui_0914 0.19 +0.7
936,312 + Dsui_0914 0.19 +0.7
936,315 - Dsui_0914 0.19 -0.3
936,332 + Dsui_0914 0.20 -0.9
936,332 - Dsui_0914 0.20 -1.3
936,337 + Dsui_0914 0.21 -0.9
936,350 - Dsui_0914 0.21 +0.7
936,355 - Dsui_0914 0.22 -0.3
936,408 + Dsui_0914 0.25 +0.7
936,416 - Dsui_0914 0.26 +0.7
936,420 + Dsui_0914 0.26 -2.3
936,420 + Dsui_0914 0.26 -0.9
936,420 + Dsui_0914 0.26 +0.7
936,425 + Dsui_0914 0.26 -1.3
936,428 - Dsui_0914 0.26 -0.3
936,475 + Dsui_0914 0.29 +0.7
936,522 + Dsui_0914 0.32 +0.7
936,522 - Dsui_0914 0.32 -0.3
936,598 - Dsui_0914 0.37 +0.7
936,605 - Dsui_0914 0.37 -0.9
936,610 + Dsui_0914 0.38 -0.3
936,615 + Dsui_0914 0.38 +0.7
936,615 + Dsui_0914 0.38 -0.3
936,615 + Dsui_0914 0.38 -2.1
936,623 - Dsui_0914 0.38 +0.7
936,623 - Dsui_0914 0.38 -0.3
936,657 + Dsui_0914 0.41 -0.9
936,665 - Dsui_0914 0.41 +0.7
936,669 + Dsui_0914 0.41 -0.3
936,682 + Dsui_0914 0.42 -0.3
936,769 + Dsui_0914 0.47 +0.1
936,805 + Dsui_0914 0.50 -1.3
936,810 + Dsui_0914 0.50 -0.3
936,829 - Dsui_0914 0.51 +0.7
936,870 + Dsui_0914 0.54 +0.7
936,878 - Dsui_0914 0.54 +0.7
936,886 + Dsui_0914 0.55 -0.3
936,894 + Dsui_0914 0.55 -0.9
936,910 + Dsui_0914 0.56 +0.7
936,910 + Dsui_0914 0.56 -0.9
936,918 - Dsui_0914 0.57 +0.7
936,930 - Dsui_0914 0.57 -0.3

Or see this region's nucleotide sequence