Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0894 and Dsui_0895 are separated by 83 nucleotides Dsui_0895 and Dsui_0896 are separated by 18 nucleotides Dsui_0896 and Dsui_0897 are separated by 117 nucleotides
Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899
_0894
Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321
_0895
Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450
_0896
Dsui_0897: Dsui_0897 - RND family efflux transporter, MFP subunit, at 914,568 to 915,755
_0897
Position (kb)
911
912
913
914
915 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 910.357 kb on + strand, within Dsui_0894 at 910.402 kb on + strand, within Dsui_0894 at 910.460 kb on + strand, within Dsui_0894 at 910.512 kb on + strand, within Dsui_0894 at 910.592 kb on - strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.641 kb on + strand at 910.658 kb on - strand at 910.667 kb on + strand at 910.727 kb on - strand at 910.916 kb on - strand at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.182 kb on - strand, within Dsui_0895 at 911.274 kb on - strand, within Dsui_0895 at 911.278 kb on - strand, within Dsui_0895 at 911.331 kb on + strand at 911.331 kb on + strand at 911.373 kb on + strand at 911.380 kb on - strand at 911.398 kb on - strand at 911.405 kb on + strand at 911.405 kb on - strand at 911.410 kb on - strand at 911.413 kb on - strand at 911.420 kb on - strand at 911.551 kb on - strand at 911.628 kb on - strand at 911.638 kb on - strand at 911.735 kb on + strand, within Dsui_0896 at 911.786 kb on + strand at 911.794 kb on - strand at 911.824 kb on + strand, within Dsui_0896 at 911.873 kb on + strand, within Dsui_0896 at 911.948 kb on + strand at 911.951 kb on - strand, within Dsui_0896 at 912.029 kb on + strand, within Dsui_0896 at 912.070 kb on - strand, within Dsui_0896 at 912.089 kb on - strand, within Dsui_0896 at 912.199 kb on + strand, within Dsui_0896 at 912.238 kb on + strand, within Dsui_0896 at 912.332 kb on + strand at 912.380 kb on - strand at 912.380 kb on - strand, within Dsui_0896 at 912.465 kb on + strand, within Dsui_0896 at 912.484 kb on + strand, within Dsui_0896 at 912.484 kb on + strand, within Dsui_0896 at 912.554 kb on + strand, within Dsui_0896 at 912.562 kb on - strand, within Dsui_0896 at 912.665 kb on + strand, within Dsui_0896 at 912.667 kb on - strand, within Dsui_0896 at 912.687 kb on - strand, within Dsui_0896 at 912.762 kb on + strand, within Dsui_0896 at 912.772 kb on + strand at 912.824 kb on + strand, within Dsui_0896 at 912.832 kb on - strand at 912.874 kb on - strand, within Dsui_0896 at 912.877 kb on + strand, within Dsui_0896 at 912.941 kb on + strand, within Dsui_0896 at 912.949 kb on - strand, within Dsui_0896 at 912.967 kb on + strand, within Dsui_0896 at 912.977 kb on + strand, within Dsui_0896 at 913.047 kb on - strand, within Dsui_0896 at 913.215 kb on + strand, within Dsui_0896 at 913.220 kb on + strand, within Dsui_0896 at 913.291 kb on - strand, within Dsui_0896 at 913.292 kb on - strand, within Dsui_0896 at 913.302 kb on + strand, within Dsui_0896 at 913.406 kb on + strand, within Dsui_0896 at 913.428 kb on - strand, within Dsui_0896 at 913.432 kb on + strand, within Dsui_0896 at 913.432 kb on + strand, within Dsui_0896 at 913.450 kb on - strand, within Dsui_0896 at 913.461 kb on + strand, within Dsui_0896 at 913.495 kb on - strand, within Dsui_0896 at 913.645 kb on - strand at 913.659 kb on + strand, within Dsui_0896 at 913.659 kb on + strand, within Dsui_0896 at 913.667 kb on - strand, within Dsui_0896 at 913.673 kb on - strand, within Dsui_0896 at 913.735 kb on - strand, within Dsui_0896 at 913.778 kb on + strand, within Dsui_0896 at 913.840 kb on - strand, within Dsui_0896 at 913.855 kb on + strand, within Dsui_0896 at 913.945 kb on + strand at 913.953 kb on - strand, within Dsui_0896 at 913.953 kb on - strand, within Dsui_0896 at 913.958 kb on - strand, within Dsui_0896 at 913.958 kb on - strand, within Dsui_0896 at 914.015 kb on + strand, within Dsui_0896 at 914.015 kb on + strand at 914.039 kb on + strand, within Dsui_0896 at 914.066 kb on + strand, within Dsui_0896 at 914.066 kb on + strand, within Dsui_0896 at 914.080 kb on + strand, within Dsui_0896 at 914.162 kb on + strand at 914.163 kb on + strand at 914.166 kb on - strand at 914.191 kb on - strand at 914.300 kb on - strand at 914.468 kb on + strand at 914.617 kb on - strand at 914.645 kb on + strand at 914.712 kb on + strand, within Dsui_0897 at 914.802 kb on - strand, within Dsui_0897 at 914.874 kb on + strand at 914.876 kb on + strand, within Dsui_0897 at 914.889 kb on + strand at 914.897 kb on + strand, within Dsui_0897 at 914.983 kb on + strand at 915.059 kb on - strand, within Dsui_0897 at 915.079 kb on + strand at 915.112 kb on - strand, within Dsui_0897 at 915.340 kb on - strand, within Dsui_0897 at 915.340 kb on - strand, within Dsui_0897 at 915.421 kb on + strand, within Dsui_0897 at 915.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 910,357 + Dsui_0894 0.79 -0.9 910,402 + Dsui_0894 0.81 +0.7 910,460 + Dsui_0894 0.83 -0.3 910,512 + Dsui_0894 0.85 +0.7 910,592 - Dsui_0894 0.88 -0.3 910,631 + Dsui_0894 0.90 +0.7 910,631 + Dsui_0894 0.90 -0.3 910,641 + -1.3 910,658 - +0.7 910,667 + +0.7 910,727 - -0.3 910,916 - +0.1 911,155 - Dsui_0895 0.51 -0.2 911,155 - Dsui_0895 0.51 -0.5 911,155 - Dsui_0895 0.51 +0.0 911,182 - Dsui_0895 0.59 -0.1 911,274 - Dsui_0895 0.86 -1.6 911,278 - Dsui_0895 0.87 +0.3 911,331 + +0.7 911,331 + -2.3 911,373 + -0.3 911,380 - -0.5 911,398 - +0.5 911,405 + -1.6 911,405 - +0.2 911,410 - -0.6 911,413 - -0.6 911,420 - -0.2 911,551 - +0.5 911,628 - -0.9 911,638 - -0.3 911,735 + Dsui_0896 0.13 +0.7 911,786 + -0.3 911,794 - -0.3 911,824 + Dsui_0896 0.16 -0.3 911,873 + Dsui_0896 0.17 +0.7 911,948 + +0.7 911,951 - Dsui_0896 0.20 -0.9 912,029 + Dsui_0896 0.22 +0.7 912,070 - Dsui_0896 0.23 -1.3 912,089 - Dsui_0896 0.24 -0.3 912,199 + Dsui_0896 0.28 -1.3 912,238 + Dsui_0896 0.29 +0.7 912,332 + +0.7 912,380 - +0.7 912,380 - Dsui_0896 0.33 +0.7 912,465 + Dsui_0896 0.36 +0.5 912,484 + Dsui_0896 0.37 -0.3 912,484 + Dsui_0896 0.37 -1.9 912,554 + Dsui_0896 0.39 +0.7 912,562 - Dsui_0896 0.39 -1.3 912,665 + Dsui_0896 0.43 -0.9 912,667 - Dsui_0896 0.43 -2.1 912,687 - Dsui_0896 0.43 -0.3 912,762 + Dsui_0896 0.46 -1.6 912,772 + +0.7 912,824 + Dsui_0896 0.48 +0.7 912,832 - +0.7 912,874 - Dsui_0896 0.49 -1.3 912,877 + Dsui_0896 0.49 -0.9 912,941 + Dsui_0896 0.51 -0.3 912,949 - Dsui_0896 0.52 -1.9 912,967 + Dsui_0896 0.52 +0.7 912,977 + Dsui_0896 0.53 -0.9 913,047 - Dsui_0896 0.55 -0.9 913,215 + Dsui_0896 0.60 +0.7 913,220 + Dsui_0896 0.60 -1.3 913,291 - Dsui_0896 0.63 -3.4 913,292 - Dsui_0896 0.63 +0.7 913,302 + Dsui_0896 0.63 -2.3 913,406 + Dsui_0896 0.66 +0.7 913,428 - Dsui_0896 0.67 -0.9 913,432 + Dsui_0896 0.67 +0.7 913,432 + Dsui_0896 0.67 +0.7 913,450 - Dsui_0896 0.68 -0.9 913,461 + Dsui_0896 0.68 +0.7 913,495 - Dsui_0896 0.69 +0.7 913,645 - +0.7 913,659 + Dsui_0896 0.75 +0.7 913,659 + Dsui_0896 0.75 +0.7 913,667 - Dsui_0896 0.75 +0.7 913,673 - Dsui_0896 0.75 -1.3 913,735 - Dsui_0896 0.77 -0.3 913,778 + Dsui_0896 0.78 +0.7 913,840 - Dsui_0896 0.80 -0.3 913,855 + Dsui_0896 0.81 -0.3 913,945 + -0.3 913,953 - Dsui_0896 0.84 -1.3 913,953 - Dsui_0896 0.84 -1.3 913,958 - Dsui_0896 0.84 -2.6 913,958 - Dsui_0896 0.84 -2.5 914,015 + Dsui_0896 0.86 -0.7 914,015 + +0.7 914,039 + Dsui_0896 0.87 +0.7 914,066 + Dsui_0896 0.88 -0.3 914,066 + Dsui_0896 0.88 -0.3 914,080 + Dsui_0896 0.88 -0.3 914,162 + -0.3 914,163 + -0.3 914,166 - +0.7 914,191 - +0.7 914,300 - -0.9 914,468 + -1.3 914,617 - -0.9 914,645 + +0.7 914,712 + Dsui_0897 0.12 -0.3 914,802 - Dsui_0897 0.20 -0.3 914,874 + -0.3 914,876 + Dsui_0897 0.26 +0.7 914,889 + -0.3 914,897 + Dsui_0897 0.28 +0.7 914,983 + +0.7 915,059 - Dsui_0897 0.41 +0.7 915,079 + +0.7 915,112 - Dsui_0897 0.46 -0.9 915,340 - Dsui_0897 0.65 -2.7 915,340 - Dsui_0897 0.65 -2.3 915,421 + Dsui_0897 0.72 -2.1 915,428 + -0.3
Or see this region's nucleotide sequence