Experiment: ALP with Thallium(I) acetate 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0801 and Dsui_0802 are separated by 18 nucleotides Dsui_0802 and Dsui_0803 are separated by 117 nucleotides Dsui_0803 and Dsui_0804 are separated by 10 nucleotides
Dsui_0801: Dsui_0801 - transcriptional regulator/sugar kinase, at 807,188 to 808,078
_0801
Dsui_0802: Dsui_0802 - hypothetical protein, at 808,097 to 808,798
_0802
Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168
_0803
Dsui_0804: Dsui_0804 - hypothetical protein, at 811,179 to 812,312
_0804
Position (kb) 808
809
810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 807.955 kb on - strand at 807.955 kb on - strand, within Dsui_0801 at 807.976 kb on + strand, within Dsui_0801 at 807.994 kb on - strand at 808.011 kb on + strand at 808.021 kb on + strand at 808.132 kb on + strand at 808.153 kb on - strand at 808.186 kb on - strand, within Dsui_0802 at 808.214 kb on - strand, within Dsui_0802 at 808.340 kb on - strand, within Dsui_0802 at 808.341 kb on + strand, within Dsui_0802 at 808.382 kb on - strand, within Dsui_0802 at 808.393 kb on - strand at 808.393 kb on - strand, within Dsui_0802 at 808.624 kb on - strand, within Dsui_0802 at 808.671 kb on - strand, within Dsui_0802 at 808.691 kb on - strand, within Dsui_0802 at 808.776 kb on + strand at 808.879 kb on - strand at 808.891 kb on + strand at 808.923 kb on - strand at 808.940 kb on + strand at 808.946 kb on + strand at 809.005 kb on + strand at 809.012 kb on + strand at 809.020 kb on - strand at 809.030 kb on - strand at 809.134 kb on + strand at 809.161 kb on + strand, within Dsui_0803 at 809.169 kb on - strand at 809.169 kb on - strand, within Dsui_0803 at 809.193 kb on + strand, within Dsui_0803 at 809.201 kb on - strand at 809.257 kb on + strand, within Dsui_0803 at 809.295 kb on + strand, within Dsui_0803 at 809.335 kb on + strand, within Dsui_0803 at 809.389 kb on - strand, within Dsui_0803 at 809.427 kb on + strand, within Dsui_0803 at 809.469 kb on + strand, within Dsui_0803 at 809.470 kb on - strand, within Dsui_0803 at 809.494 kb on - strand, within Dsui_0803 at 809.529 kb on - strand, within Dsui_0803 at 809.529 kb on - strand at 809.529 kb on - strand, within Dsui_0803 at 809.531 kb on + strand, within Dsui_0803 at 809.605 kb on - strand, within Dsui_0803 at 809.606 kb on - strand, within Dsui_0803 at 809.621 kb on + strand, within Dsui_0803 at 809.626 kb on + strand, within Dsui_0803 at 809.634 kb on - strand, within Dsui_0803 at 809.644 kb on + strand, within Dsui_0803 at 809.685 kb on + strand, within Dsui_0803 at 809.728 kb on - strand, within Dsui_0803 at 809.785 kb on + strand, within Dsui_0803 at 809.830 kb on + strand, within Dsui_0803 at 809.923 kb on + strand, within Dsui_0803 at 809.930 kb on - strand, within Dsui_0803 at 809.994 kb on + strand, within Dsui_0803 at 810.002 kb on - strand, within Dsui_0803 at 810.047 kb on - strand, within Dsui_0803 at 810.123 kb on + strand, within Dsui_0803 at 810.140 kb on + strand, within Dsui_0803 at 810.142 kb on - strand, within Dsui_0803 at 810.162 kb on + strand, within Dsui_0803 at 810.228 kb on + strand, within Dsui_0803 at 810.235 kb on + strand, within Dsui_0803 at 810.236 kb on - strand, within Dsui_0803 at 810.305 kb on - strand, within Dsui_0803 at 810.336 kb on + strand, within Dsui_0803 at 810.343 kb on + strand, within Dsui_0803 at 810.389 kb on + strand, within Dsui_0803 at 810.422 kb on + strand, within Dsui_0803 at 810.425 kb on - strand at 810.505 kb on + strand, within Dsui_0803 at 810.528 kb on - strand, within Dsui_0803 at 810.543 kb on + strand, within Dsui_0803 at 810.578 kb on - strand, within Dsui_0803 at 810.611 kb on - strand, within Dsui_0803 at 810.624 kb on - strand, within Dsui_0803 at 810.657 kb on + strand, within Dsui_0803 at 810.675 kb on + strand, within Dsui_0803 at 810.675 kb on + strand, within Dsui_0803 at 810.704 kb on - strand, within Dsui_0803 at 810.715 kb on - strand, within Dsui_0803 at 810.740 kb on - strand, within Dsui_0803 at 810.743 kb on + strand, within Dsui_0803 at 810.746 kb on - strand, within Dsui_0803 at 810.751 kb on - strand, within Dsui_0803 at 810.751 kb on - strand, within Dsui_0803 at 810.752 kb on - strand, within Dsui_0803 at 810.768 kb on + strand, within Dsui_0803 at 810.776 kb on - strand, within Dsui_0803 at 810.776 kb on - strand, within Dsui_0803 at 810.776 kb on - strand, within Dsui_0803 at 810.779 kb on + strand, within Dsui_0803 at 810.784 kb on + strand, within Dsui_0803 at 810.848 kb on - strand, within Dsui_0803 at 810.867 kb on - strand, within Dsui_0803 at 810.904 kb on + strand, within Dsui_0803 at 810.923 kb on + strand, within Dsui_0803 at 810.961 kb on + strand at 810.991 kb on + strand at 810.998 kb on + strand at 811.057 kb on - strand at 811.059 kb on + strand at 811.059 kb on + strand at 811.069 kb on + strand at 811.083 kb on - strand at 811.170 kb on - strand at 811.171 kb on - strand at 811.184 kb on - strand at 811.196 kb on - strand at 811.218 kb on - strand at 811.225 kb on + strand at 811.243 kb on - strand at 811.265 kb on + strand at 811.350 kb on + strand, within Dsui_0804 at 811.362 kb on + strand, within Dsui_0804 at 811.379 kb on - strand, within Dsui_0804 at 811.526 kb on + strand, within Dsui_0804 at 811.589 kb on + strand, within Dsui_0804 at 811.600 kb on + strand, within Dsui_0804 at 811.625 kb on + strand, within Dsui_0804 at 811.731 kb on + strand at 811.746 kb on - strand, within Dsui_0804 at 811.815 kb on + strand, within Dsui_0804 at 811.847 kb on + strand, within Dsui_0804 at 811.855 kb on - strand, within Dsui_0804 at 811.855 kb on - strand, within Dsui_0804 at 811.880 kb on + strand, within Dsui_0804 at 811.884 kb on + strand, within Dsui_0804 at 811.884 kb on + strand at 811.892 kb on - strand, within Dsui_0804 at 811.894 kb on - strand, within Dsui_0804 at 811.902 kb on - strand, within Dsui_0804 at 811.945 kb on + strand, within Dsui_0804 at 811.953 kb on - strand, within Dsui_0804 at 811.955 kb on + strand, within Dsui_0804 at 811.963 kb on - strand, within Dsui_0804 at 811.970 kb on + strand, within Dsui_0804 at 811.970 kb on + strand, within Dsui_0804 at 811.978 kb on - strand, within Dsui_0804 at 812.012 kb on - strand, within Dsui_0804 at 812.063 kb on + strand, within Dsui_0804 at 812.063 kb on + strand, within Dsui_0804 at 812.153 kb on + strand, within Dsui_0804
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml remove 807,955 - +0.7 807,955 - Dsui_0801 0.86 -1.6 807,976 + Dsui_0801 0.88 -0.6 807,994 - +0.7 808,011 + +0.5 808,021 + -0.2 808,132 + +0.3 808,153 - +0.7 808,186 - Dsui_0802 0.13 -0.9 808,214 - Dsui_0802 0.17 -1.3 808,340 - Dsui_0802 0.35 -0.9 808,341 + Dsui_0802 0.35 -0.7 808,382 - Dsui_0802 0.41 -2.5 808,393 - -0.9 808,393 - Dsui_0802 0.42 -0.3 808,624 - Dsui_0802 0.75 -0.9 808,671 - Dsui_0802 0.82 +0.7 808,691 - Dsui_0802 0.85 -0.7 808,776 + -0.7 808,879 - +0.7 808,891 + +0.7 808,923 - -0.0 808,940 + +1.7 808,946 + -0.3 809,005 + -1.5 809,012 + -0.4 809,020 - +0.7 809,030 - -0.3 809,134 + -1.3 809,161 + Dsui_0803 0.11 -1.0 809,169 - +0.7 809,169 - Dsui_0803 0.11 -1.6 809,193 + Dsui_0803 0.12 -0.9 809,201 - +0.7 809,257 + Dsui_0803 0.15 +0.1 809,295 + Dsui_0803 0.17 -1.3 809,335 + Dsui_0803 0.19 -1.8 809,389 - Dsui_0803 0.21 -3.0 809,427 + Dsui_0803 0.23 +0.7 809,469 + Dsui_0803 0.25 -2.3 809,470 - Dsui_0803 0.25 -0.3 809,494 - Dsui_0803 0.26 +0.7 809,529 - Dsui_0803 0.27 -0.3 809,529 - +0.7 809,529 - Dsui_0803 0.27 -1.6 809,531 + Dsui_0803 0.27 -1.4 809,605 - Dsui_0803 0.31 -2.1 809,606 - Dsui_0803 0.31 +0.7 809,621 + Dsui_0803 0.31 -0.1 809,626 + Dsui_0803 0.32 -0.1 809,634 - Dsui_0803 0.32 +0.7 809,644 + Dsui_0803 0.32 -1.4 809,685 + Dsui_0803 0.34 +0.1 809,728 - Dsui_0803 0.36 +0.7 809,785 + Dsui_0803 0.39 -2.5 809,830 + Dsui_0803 0.41 +2.3 809,923 + Dsui_0803 0.45 -1.3 809,930 - Dsui_0803 0.45 +0.7 809,994 + Dsui_0803 0.48 -0.3 810,002 - Dsui_0803 0.48 -1.6 810,047 - Dsui_0803 0.50 -0.9 810,123 + Dsui_0803 0.54 -1.2 810,140 + Dsui_0803 0.54 -1.9 810,142 - Dsui_0803 0.54 -0.9 810,162 + Dsui_0803 0.55 -1.9 810,228 + Dsui_0803 0.58 +1.3 810,235 + Dsui_0803 0.59 +2.3 810,236 - Dsui_0803 0.59 +0.7 810,305 - Dsui_0803 0.62 -0.6 810,336 + Dsui_0803 0.63 -0.9 810,343 + Dsui_0803 0.63 +0.5 810,389 + Dsui_0803 0.65 -0.3 810,422 + Dsui_0803 0.67 +0.4 810,425 - -0.3 810,505 + Dsui_0803 0.71 -1.3 810,528 - Dsui_0803 0.72 -2.9 810,543 + Dsui_0803 0.72 -1.6 810,578 - Dsui_0803 0.74 +0.7 810,611 - Dsui_0803 0.75 -1.3 810,624 - Dsui_0803 0.76 -0.9 810,657 + Dsui_0803 0.77 -1.2 810,675 + Dsui_0803 0.78 +0.4 810,675 + Dsui_0803 0.78 +0.0 810,704 - Dsui_0803 0.79 -0.9 810,715 - Dsui_0803 0.80 +0.7 810,740 - Dsui_0803 0.81 +0.7 810,743 + Dsui_0803 0.81 -0.9 810,746 - Dsui_0803 0.81 -1.0 810,751 - Dsui_0803 0.81 -1.6 810,751 - Dsui_0803 0.81 -2.2 810,752 - Dsui_0803 0.81 -1.3 810,768 + Dsui_0803 0.82 -1.3 810,776 - Dsui_0803 0.83 +0.7 810,776 - Dsui_0803 0.83 -1.3 810,776 - Dsui_0803 0.83 -1.3 810,779 + Dsui_0803 0.83 -0.8 810,784 + Dsui_0803 0.83 -1.6 810,848 - Dsui_0803 0.86 +0.7 810,867 - Dsui_0803 0.87 -1.6 810,904 + Dsui_0803 0.88 -0.3 810,923 + Dsui_0803 0.89 -0.3 810,961 + -0.9 810,991 + -0.4 810,998 + -2.2 811,057 - -0.3 811,059 + -0.2 811,059 + -0.3 811,069 + +0.2 811,083 - -0.9 811,170 - -0.8 811,171 - -0.3 811,184 - +0.4 811,196 - +0.1 811,218 - -0.5 811,225 + -0.8 811,243 - +1.7 811,265 + -1.3 811,350 + Dsui_0804 0.15 +0.7 811,362 + Dsui_0804 0.16 -0.3 811,379 - Dsui_0804 0.18 -0.3 811,526 + Dsui_0804 0.31 +0.7 811,589 + Dsui_0804 0.36 +0.7 811,600 + Dsui_0804 0.37 -0.3 811,625 + Dsui_0804 0.39 -1.6 811,731 + +0.7 811,746 - Dsui_0804 0.50 -2.1 811,815 + Dsui_0804 0.56 -0.9 811,847 + Dsui_0804 0.59 -1.6 811,855 - Dsui_0804 0.60 +2.3 811,855 - Dsui_0804 0.60 -0.9 811,880 + Dsui_0804 0.62 +0.7 811,884 + Dsui_0804 0.62 -0.3 811,884 + +0.7 811,892 - Dsui_0804 0.63 -0.3 811,894 - Dsui_0804 0.63 -0.3 811,902 - Dsui_0804 0.64 +0.1 811,945 + Dsui_0804 0.68 +0.7 811,953 - Dsui_0804 0.68 +0.7 811,955 + Dsui_0804 0.68 +0.7 811,963 - Dsui_0804 0.69 +0.7 811,970 + Dsui_0804 0.70 -1.3 811,970 + Dsui_0804 0.70 -0.3 811,978 - Dsui_0804 0.70 +1.7 812,012 - Dsui_0804 0.73 +2.3 812,063 + Dsui_0804 0.78 -3.0 812,063 + Dsui_0804 0.78 -0.9 812,153 + Dsui_0804 0.86 -0.3
Or see this region's nucleotide sequence