Strain Fitness in Dechlorosoma suillum PS around Dsui_0604

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0602 and Dsui_0603 are separated by 13 nucleotidesDsui_0603 and Dsui_0604 are separated by 158 nucleotidesDsui_0604 and Dsui_0605 are separated by 16 nucleotides Dsui_0602: Dsui_0602 - pyrroline-5-carboxylate reductase, at 597,289 to 598,101 _0602 Dsui_0603: Dsui_0603 - pyridoxal phosphate enzyme, YggS family, at 598,115 to 598,819 _0603 Dsui_0604: Dsui_0604 - pilus retraction protein PilT, at 598,978 to 600,021 _0604 Dsui_0605: Dsui_0605 - pilus retraction protein PilT, at 600,038 to 601,174 _0605 Position (kb) 598 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1at 598.160 kb on - strandat 598.176 kb on + strandat 598.200 kb on + strand, within Dsui_0603at 598.212 kb on + strand, within Dsui_0603at 598.262 kb on + strand, within Dsui_0603at 598.355 kb on - strand, within Dsui_0603at 598.409 kb on + strandat 598.451 kb on - strand, within Dsui_0603at 598.564 kb on + strandat 598.710 kb on + strand, within Dsui_0603at 598.712 kb on - strand, within Dsui_0603at 598.744 kb on + strand, within Dsui_0603at 598.781 kb on + strandat 598.917 kb on - strandat 598.938 kb on - strandat 598.962 kb on + strandat 599.128 kb on + strand, within Dsui_0604at 599.128 kb on + strand, within Dsui_0604at 599.154 kb on + strand, within Dsui_0604at 599.209 kb on - strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.291 kb on + strand, within Dsui_0604at 599.356 kb on - strand, within Dsui_0604at 599.369 kb on - strandat 599.385 kb on + strand, within Dsui_0604at 599.387 kb on + strand, within Dsui_0604at 599.398 kb on - strand, within Dsui_0604at 599.447 kb on - strand, within Dsui_0604at 599.447 kb on - strand, within Dsui_0604at 599.479 kb on + strand, within Dsui_0604at 599.487 kb on - strand, within Dsui_0604at 599.487 kb on - strand, within Dsui_0604at 599.516 kb on + strand, within Dsui_0604at 599.542 kb on - strand, within Dsui_0604at 599.544 kb on + strand, within Dsui_0604at 599.598 kb on + strand, within Dsui_0604at 599.755 kb on - strand, within Dsui_0604at 599.883 kb on - strand, within Dsui_0604at 600.074 kb on - strandat 600.097 kb on - strandat 600.133 kb on - strandat 600.175 kb on - strand, within Dsui_0605at 600.206 kb on - strand, within Dsui_0605at 600.213 kb on + strand, within Dsui_0605at 600.418 kb on + strand, within Dsui_0605at 600.545 kb on - strand, within Dsui_0605at 600.553 kb on - strand, within Dsui_0605at 600.695 kb on - strand, within Dsui_0605at 600.828 kb on + strand, within Dsui_0605at 600.828 kb on + strand, within Dsui_0605at 600.828 kb on + strand, within Dsui_0605at 600.836 kb on - strand, within Dsui_0605at 600.836 kb on - strand, within Dsui_0605at 600.836 kb on - strand, within Dsui_0605at 600.860 kb on - strand, within Dsui_0605at 600.968 kb on - strand, within Dsui_0605

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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598,160 - -1.7
598,176 + -0.5
598,200 + Dsui_0603 0.12 -1.0
598,212 + Dsui_0603 0.14 -2.5
598,262 + Dsui_0603 0.21 -0.5
598,355 - Dsui_0603 0.34 -2.8
598,409 + +0.5
598,451 - Dsui_0603 0.48 -3.3
598,564 + -0.5
598,710 + Dsui_0603 0.84 -1.0
598,712 - Dsui_0603 0.85 -3.2
598,744 + Dsui_0603 0.89 -2.6
598,781 + +0.5
598,917 - +0.5
598,938 - +0.5
598,962 + -0.3
599,128 + Dsui_0604 0.14 -0.7
599,128 + Dsui_0604 0.14 -0.1
599,154 + Dsui_0604 0.17 -0.6
599,209 - Dsui_0604 0.22 -2.5
599,291 + Dsui_0604 0.30 -0.3
599,291 + Dsui_0604 0.30 -0.7
599,291 + Dsui_0604 0.30 -0.5
599,291 + Dsui_0604 0.30 -0.5
599,356 - Dsui_0604 0.36 +0.5
599,369 - +0.5
599,385 + Dsui_0604 0.39 -0.4
599,387 + Dsui_0604 0.39 -0.5
599,398 - Dsui_0604 0.40 -1.0
599,447 - Dsui_0604 0.45 -1.5
599,447 - Dsui_0604 0.45 -2.6
599,479 + Dsui_0604 0.48 -0.5
599,487 - Dsui_0604 0.49 -2.0
599,487 - Dsui_0604 0.49 +0.5
599,516 + Dsui_0604 0.52 -0.7
599,542 - Dsui_0604 0.54 +0.5
599,544 + Dsui_0604 0.54 -0.7
599,598 + Dsui_0604 0.59 -0.6
599,755 - Dsui_0604 0.74 +0.5
599,883 - Dsui_0604 0.87 +0.5
600,074 - -1.5
600,097 - -1.0
600,133 - -1.0
600,175 - Dsui_0605 0.12 +0.5
600,206 - Dsui_0605 0.15 -0.8
600,213 + Dsui_0605 0.15 +0.0
600,418 + Dsui_0605 0.33 -0.2
600,545 - Dsui_0605 0.45 -1.0
600,553 - Dsui_0605 0.45 -0.5
600,695 - Dsui_0605 0.58 +0.5
600,828 + Dsui_0605 0.69 -0.8
600,828 + Dsui_0605 0.69 +0.1
600,828 + Dsui_0605 0.69 -0.3
600,836 - Dsui_0605 0.70 -0.8
600,836 - Dsui_0605 0.70 +0.5
600,836 - Dsui_0605 0.70 -2.9
600,860 - Dsui_0605 0.72 -0.6
600,968 - Dsui_0605 0.82 -1.8

Or see this region's nucleotide sequence