Strain Fitness in Dechlorosoma suillum PS around Dsui_0443

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0441 and Dsui_0442 are separated by 159 nucleotidesDsui_0442 and Dsui_0443 are separated by 6 nucleotidesDsui_0443 and Dsui_0444 are separated by 176 nucleotidesDsui_0444 and Dsui_0445 are separated by 24 nucleotides Dsui_0441: Dsui_0441 - Mg2+ transporter MgtE, at 448,010 to 449,452 _0441 Dsui_0442: Dsui_0442 - monofunctional biosynthetic peptidoglycan transglycosylase, at 449,612 to 450,304 _0442 Dsui_0443: Dsui_0443 - shikimate 5-dehydrogenase, at 450,311 to 451,126 _0443 Dsui_0444: Dsui_0444 - hemerythrin-like metal-binding domain-containing protein, at 451,303 to 451,761 _0444 Dsui_0445: Dsui_0445 - TonB family protein, at 451,786 to 452,673 _0445 Position (kb) 450 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1at 449.514 kb on + strandat 449.522 kb on - strandat 449.565 kb on - strandat 449.565 kb on - strandat 449.737 kb on + strand, within Dsui_0442at 450.036 kb on + strand, within Dsui_0442at 450.037 kb on - strand, within Dsui_0442at 450.037 kb on - strand, within Dsui_0442at 450.101 kb on - strand, within Dsui_0442at 450.217 kb on + strand, within Dsui_0442at 450.220 kb on - strand, within Dsui_0442at 450.220 kb on - strand, within Dsui_0442at 450.288 kb on - strandat 451.165 kb on + strandat 451.174 kb on - strandat 451.199 kb on - strandat 451.209 kb on - strandat 451.266 kb on + strandat 451.305 kb on - strandat 451.357 kb on - strand, within Dsui_0444at 451.377 kb on + strand, within Dsui_0444at 451.397 kb on - strand, within Dsui_0444at 451.436 kb on + strand, within Dsui_0444at 451.481 kb on - strand, within Dsui_0444at 451.491 kb on + strand, within Dsui_0444at 451.499 kb on - strand, within Dsui_0444at 451.529 kb on + strand, within Dsui_0444at 451.583 kb on - strand, within Dsui_0444at 451.585 kb on + strand, within Dsui_0444at 451.622 kb on + strand, within Dsui_0444at 451.622 kb on + strand, within Dsui_0444at 451.629 kb on - strand, within Dsui_0444at 451.665 kb on + strand, within Dsui_0444at 451.749 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
remove
449,514 + +0.6
449,522 - -0.2
449,565 - -1.0
449,565 - -0.2
449,737 + Dsui_0442 0.18 -2.6
450,036 + Dsui_0442 0.61 -1.0
450,037 - Dsui_0442 0.61 -0.7
450,037 - Dsui_0442 0.61 -0.7
450,101 - Dsui_0442 0.71 -0.3
450,217 + Dsui_0442 0.87 +0.6
450,220 - Dsui_0442 0.88 -0.5
450,220 - Dsui_0442 0.88 -0.4
450,288 - +1.6
451,165 + +0.6
451,174 - -0.4
451,199 - +0.0
451,209 - -3.1
451,266 + -2.0
451,305 - -0.0
451,357 - Dsui_0444 0.12 -1.0
451,377 + Dsui_0444 0.16 -0.6
451,397 - Dsui_0444 0.20 -0.8
451,436 + Dsui_0444 0.29 -0.3
451,481 - Dsui_0444 0.39 -1.0
451,491 + Dsui_0444 0.41 -1.7
451,499 - Dsui_0444 0.43 +0.3
451,529 + Dsui_0444 0.49 -0.6
451,583 - Dsui_0444 0.61 -1.4
451,585 + Dsui_0444 0.61 -0.4
451,622 + Dsui_0444 0.69 -0.3
451,622 + Dsui_0444 0.69 -0.4
451,629 - Dsui_0444 0.71 -0.1
451,665 + Dsui_0444 0.79 -0.2
451,749 + -0.2

Or see this region's nucleotide sequence