Strain Fitness in Dechlorosoma suillum PS around Dsui_0287

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0285 and Dsui_0286 overlap by 4 nucleotidesDsui_0286 and Dsui_0287 are separated by 237 nucleotidesDsui_0287 and Dsui_0288 are separated by 52 nucleotidesDsui_0288 and Dsui_0289 are separated by 443 nucleotides Dsui_0285: Dsui_0285 - methionine aminopeptidase, type I, at 285,562 to 286,386 _0285 Dsui_0286: Dsui_0286 - Protein of unknown function (DUF3423), at 286,383 to 286,613 _0286 Dsui_0287: Dsui_0287 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 286,851 to 287,327 _0287 Dsui_0288: Dsui_0288 - hypothetical protein, at 287,380 to 287,595 _0288 Dsui_0289: Dsui_0289 - putative membrane protein, at 288,039 to 288,356 _0289 Position (kb) 286 287 288Strain fitness (log2 ratio) -2 -1 0 1at 285.852 kb on - strand, within Dsui_0285at 285.852 kb on - strand, within Dsui_0285at 285.887 kb on + strandat 285.895 kb on - strand, within Dsui_0285at 285.913 kb on + strandat 285.983 kb on + strand, within Dsui_0285at 286.042 kb on + strandat 286.154 kb on - strand, within Dsui_0285at 286.172 kb on + strandat 286.178 kb on + strand, within Dsui_0285at 286.179 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.180 kb on - strand, within Dsui_0285at 286.186 kb on - strand, within Dsui_0285at 286.190 kb on - strand, within Dsui_0285at 286.302 kb on + strandat 286.341 kb on - strandat 286.425 kb on + strandat 286.425 kb on + strandat 286.433 kb on - strand, within Dsui_0286at 286.471 kb on + strandat 286.471 kb on + strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.479 kb on - strand, within Dsui_0286at 286.484 kb on - strand, within Dsui_0286at 286.489 kb on - strand, within Dsui_0286at 286.489 kb on - strand, within Dsui_0286at 286.548 kb on + strand, within Dsui_0286at 286.548 kb on + strand, within Dsui_0286at 286.556 kb on - strand, within Dsui_0286at 286.608 kb on + strandat 286.616 kb on - strandat 286.616 kb on - strandat 286.618 kb on + strandat 286.669 kb on + strandat 286.674 kb on + strandat 286.674 kb on + strandat 286.674 kb on + strandat 286.674 kb on + strandat 286.682 kb on - strandat 286.682 kb on - strandat 286.682 kb on - strandat 286.744 kb on - strandat 286.788 kb on + strandat 286.791 kb on - strandat 287.172 kb on + strand, within Dsui_0287at 287.194 kb on - strand, within Dsui_0287at 287.303 kb on + strandat 287.469 kb on + strand, within Dsui_0288at 287.479 kb on + strand, within Dsui_0288at 287.487 kb on - strand, within Dsui_0288at 287.506 kb on + strand, within Dsui_0288at 287.531 kb on + strand, within Dsui_0288at 287.539 kb on - strand, within Dsui_0288at 287.563 kb on - strand, within Dsui_0288at 287.565 kb on + strand, within Dsui_0288at 287.565 kb on + strand, within Dsui_0288at 287.565 kb on + strand, within Dsui_0288at 287.575 kb on + strandat 287.584 kb on + strandat 287.699 kb on + strandat 287.744 kb on + strandat 287.744 kb on + strandat 287.747 kb on - strandat 288.046 kb on + strandat 288.047 kb on + strandat 288.051 kb on + strandat 288.051 kb on + strandat 288.059 kb on - strandat 288.099 kb on + strand, within Dsui_0289at 288.204 kb on - strand, within Dsui_0289at 288.243 kb on + strand, within Dsui_0289at 288.323 kb on - strand, within Dsui_0289

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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285,852 - Dsui_0285 0.35 +0.7
285,852 - Dsui_0285 0.35 -2.3
285,887 + +0.7
285,895 - Dsui_0285 0.40 -0.3
285,913 + +0.7
285,983 + Dsui_0285 0.51 -1.9
286,042 + +0.7
286,154 - Dsui_0285 0.72 -0.5
286,172 + +0.7
286,178 + Dsui_0285 0.75 -1.9
286,179 - Dsui_0285 0.75 +1.7
286,180 - Dsui_0285 0.75 +0.7
286,180 - Dsui_0285 0.75 +0.7
286,180 - Dsui_0285 0.75 -0.3
286,180 - Dsui_0285 0.75 +0.7
286,180 - Dsui_0285 0.75 -1.2
286,186 - Dsui_0285 0.76 -1.9
286,190 - Dsui_0285 0.76 -1.6
286,302 + -0.3
286,341 - +0.4
286,425 + -0.3
286,425 + +0.7
286,433 - Dsui_0286 0.22 -0.0
286,471 + -0.9
286,471 + Dsui_0286 0.38 -1.3
286,479 - Dsui_0286 0.42 -0.2
286,479 - Dsui_0286 0.42 -0.1
286,479 - Dsui_0286 0.42 -0.2
286,479 - Dsui_0286 0.42 -0.3
286,484 - Dsui_0286 0.44 -0.2
286,489 - Dsui_0286 0.46 +0.1
286,489 - Dsui_0286 0.46 -0.2
286,548 + Dsui_0286 0.71 -0.9
286,548 + Dsui_0286 0.71 +0.7
286,556 - Dsui_0286 0.75 -0.0
286,608 + +0.7
286,616 - +0.7
286,616 - +0.7
286,618 + +0.7
286,669 + -0.3
286,674 + -1.6
286,674 + -0.3
286,674 + -0.9
286,674 + +0.7
286,682 - +0.7
286,682 - -0.9
286,682 - +0.7
286,744 - -0.9
286,788 + -0.1
286,791 - -1.6
287,172 + Dsui_0287 0.67 -0.0
287,194 - Dsui_0287 0.72 -0.9
287,303 + -0.3
287,469 + Dsui_0288 0.41 -0.2
287,479 + Dsui_0288 0.46 -0.1
287,487 - Dsui_0288 0.50 -1.9
287,506 + Dsui_0288 0.58 -0.2
287,531 + Dsui_0288 0.70 -0.0
287,539 - Dsui_0288 0.74 -1.9
287,563 - Dsui_0288 0.85 -1.3
287,565 + Dsui_0288 0.86 -0.2
287,565 + Dsui_0288 0.86 -0.2
287,565 + Dsui_0288 0.86 -0.0
287,575 + -0.2
287,584 + +0.1
287,699 + -0.2
287,744 + +1.7
287,744 + -1.6
287,747 - -0.5
288,046 + -0.3
288,047 + -1.3
288,051 + +0.2
288,051 + -0.3
288,059 - -0.9
288,099 + Dsui_0289 0.19 -2.1
288,204 - Dsui_0289 0.52 -0.3
288,243 + Dsui_0289 0.64 -0.7
288,323 - Dsui_0289 0.89 -0.3

Or see this region's nucleotide sequence