Strain Fitness in Dechlorosoma suillum PS around Dsui_0094

Experiment: ALP with Thallium(I) acetate 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0092 and Dsui_0093 overlap by 4 nucleotidesDsui_0093 and Dsui_0094 are separated by 122 nucleotidesDsui_0094 and Dsui_0095 are separated by 9 nucleotides Dsui_0092: Dsui_0092 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 91,139 to 91,639 _0092 Dsui_0093: Dsui_0093 - 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase, at 91,636 to 92,490 _0093 Dsui_0094: Dsui_0094 - 2-oxoacid:ferredoxin oxidoreductase, gamma subunit, at 92,613 to 93,230 _0094 Dsui_0095: Dsui_0095 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 93,240 to 95,105 _0095 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1at 92.525 kb on + strandat 92.533 kb on - strandat 92.534 kb on - strandat 92.584 kb on - strandat 92.591 kb on - strandat 92.595 kb on - strandat 92.612 kb on - strandat 92.612 kb on - strandat 92.612 kb on - strandat 92.616 kb on + strandat 92.616 kb on + strandat 92.616 kb on + strandat 92.616 kb on + strandat 92.619 kb on - strandat 92.619 kb on - strandat 92.619 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.653 kb on - strandat 92.720 kb on + strandat 92.770 kb on + strand, within Dsui_0094at 92.777 kb on + strand, within Dsui_0094at 92.877 kb on - strand, within Dsui_0094at 92.908 kb on - strandat 92.908 kb on - strand, within Dsui_0094at 92.927 kb on + strand, within Dsui_0094at 92.935 kb on - strand, within Dsui_0094at 92.935 kb on - strand, within Dsui_0094at 92.935 kb on - strand, within Dsui_0094at 92.943 kb on - strand, within Dsui_0094at 92.994 kb on - strand, within Dsui_0094at 93.014 kb on + strandat 93.033 kb on + strandat 93.033 kb on + strand, within Dsui_0094at 93.041 kb on - strand, within Dsui_0094at 93.042 kb on - strand, within Dsui_0094at 93.050 kb on + strand, within Dsui_0094at 93.095 kb on + strand, within Dsui_0094at 93.127 kb on - strand, within Dsui_0094at 93.140 kb on - strand, within Dsui_0094at 93.291 kb on + strandat 93.386 kb on - strandat 93.432 kb on - strand, within Dsui_0095at 93.475 kb on + strand, within Dsui_0095at 93.484 kb on + strand, within Dsui_0095at 93.484 kb on + strandat 93.522 kb on - strand, within Dsui_0095at 93.544 kb on + strandat 93.553 kb on + strandat 93.553 kb on + strandat 93.561 kb on - strand, within Dsui_0095at 93.574 kb on + strand, within Dsui_0095at 93.582 kb on - strand, within Dsui_0095at 93.582 kb on - strand, within Dsui_0095at 93.610 kb on - strand, within Dsui_0095at 93.647 kb on - strand, within Dsui_0095at 93.704 kb on - strand, within Dsui_0095at 93.789 kb on - strand, within Dsui_0095at 93.792 kb on - strand, within Dsui_0095at 93.798 kb on + strandat 93.798 kb on + strand, within Dsui_0095at 93.798 kb on + strand, within Dsui_0095at 93.868 kb on + strandat 93.887 kb on - strand, within Dsui_0095at 93.906 kb on - strand, within Dsui_0095at 93.967 kb on - strand, within Dsui_0095at 93.967 kb on - strand, within Dsui_0095at 94.010 kb on + strand, within Dsui_0095at 94.018 kb on - strand, within Dsui_0095at 94.028 kb on + strand, within Dsui_0095at 94.051 kb on - strand, within Dsui_0095at 94.118 kb on + strand, within Dsui_0095at 94.152 kb on - strand, within Dsui_0095at 94.227 kb on + strand, within Dsui_0095

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Thallium(I) acetate 0.003 mg/ml
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92,525 + -0.1
92,533 - +0.2
92,534 - +0.1
92,584 - -0.1
92,591 - -1.1
92,595 - -0.1
92,612 - -0.1
92,612 - -2.3
92,612 - -0.7
92,616 + -0.1
92,616 + -2.1
92,616 + +0.9
92,616 + -1.5
92,619 - -0.7
92,619 - +0.9
92,619 - +0.9
92,624 - -0.7
92,624 - -1.7
92,624 - -1.5
92,624 - -0.7
92,624 - -0.7
92,653 - -0.7
92,720 + +0.9
92,770 + Dsui_0094 0.25 -1.1
92,777 + Dsui_0094 0.27 +0.9
92,877 - Dsui_0094 0.43 -0.1
92,908 - +0.9
92,908 - Dsui_0094 0.48 -0.1
92,927 + Dsui_0094 0.51 +0.9
92,935 - Dsui_0094 0.52 -1.9
92,935 - Dsui_0094 0.52 -0.7
92,935 - Dsui_0094 0.52 -1.5
92,943 - Dsui_0094 0.53 +0.9
92,994 - Dsui_0094 0.62 +0.9
93,014 + +0.9
93,033 + -1.1
93,033 + Dsui_0094 0.68 -0.1
93,041 - Dsui_0094 0.69 +0.9
93,042 - Dsui_0094 0.69 +0.9
93,050 + Dsui_0094 0.71 -1.9
93,095 + Dsui_0094 0.78 -0.7
93,127 - Dsui_0094 0.83 +0.9
93,140 - Dsui_0094 0.85 -1.5
93,291 + +0.9
93,386 - -0.7
93,432 - Dsui_0095 0.10 -0.1
93,475 + Dsui_0095 0.13 -1.5
93,484 + Dsui_0095 0.13 -0.1
93,484 + +0.9
93,522 - Dsui_0095 0.15 -1.5
93,544 + +0.9
93,553 + +0.9
93,553 + -1.1
93,561 - Dsui_0095 0.17 +0.9
93,574 + Dsui_0095 0.18 -0.7
93,582 - Dsui_0095 0.18 -0.7
93,582 - Dsui_0095 0.18 +0.9
93,610 - Dsui_0095 0.20 +0.9
93,647 - Dsui_0095 0.22 -0.1
93,704 - Dsui_0095 0.25 +0.9
93,789 - Dsui_0095 0.29 -1.5
93,792 - Dsui_0095 0.30 +0.9
93,798 + +0.9
93,798 + Dsui_0095 0.30 -0.1
93,798 + Dsui_0095 0.30 -0.7
93,868 + +0.9
93,887 - Dsui_0095 0.35 +0.9
93,906 - Dsui_0095 0.36 -0.7
93,967 - Dsui_0095 0.39 +0.9
93,967 - Dsui_0095 0.39 -0.7
94,010 + Dsui_0095 0.41 -1.9
94,018 - Dsui_0095 0.42 -2.5
94,028 + Dsui_0095 0.42 -0.7
94,051 - Dsui_0095 0.43 +0.9
94,118 + Dsui_0095 0.47 -1.7
94,152 - Dsui_0095 0.49 +0.9
94,227 + Dsui_0095 0.53 -0.7

Or see this region's nucleotide sequence