Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23255

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23240 and BWI76_RS23245 are separated by 12 nucleotidesBWI76_RS23245 and BWI76_RS23250 overlap by 16 nucleotidesBWI76_RS23250 and BWI76_RS23255 overlap by 4 nucleotidesBWI76_RS23255 and BWI76_RS23260 overlap by 10 nucleotidesBWI76_RS23260 and BWI76_RS23265 are separated by 218 nucleotides BWI76_RS23240: BWI76_RS23240 - exonuclease V subunit gamma, at 4,846,841 to 4,850,215 _RS23240 BWI76_RS23245: BWI76_RS23245 - hypothetical protein, at 4,850,228 to 4,850,551 _RS23245 BWI76_RS23250: BWI76_RS23250 - hypothetical protein, at 4,850,536 to 4,850,943 _RS23250 BWI76_RS23255: BWI76_RS23255 - prepilin-type cleavage/methylation domain-containing protein, at 4,850,940 to 4,851,503 _RS23255 BWI76_RS23260: BWI76_RS23260 - prepilin-type cleavage/methylation domain-containing protein, at 4,851,494 to 4,851,961 _RS23260 BWI76_RS23265: BWI76_RS23265 - hypothetical protein, at 4,852,180 to 4,853,856 _RS23265 Position (kb) 4850 4851 4852Strain fitness (log2 ratio) -1 0 1at 4850.375 kb on - strand, within BWI76_RS23245at 4850.433 kb on + strand, within BWI76_RS23245at 4850.679 kb on - strand, within BWI76_RS23250at 4850.784 kb on - strand, within BWI76_RS23250at 4850.953 kb on - strandat 4851.173 kb on + strand, within BWI76_RS23255at 4851.397 kb on - strand, within BWI76_RS23255at 4851.397 kb on - strand, within BWI76_RS23255at 4851.399 kb on + strand, within BWI76_RS23255at 4851.499 kb on + strandat 4851.617 kb on - strand, within BWI76_RS23260at 4851.617 kb on - strandat 4851.642 kb on - strand, within BWI76_RS23260at 4851.803 kb on + strand, within BWI76_RS23260at 4851.945 kb on - strandat 4852.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,850,375 - BWI76_RS23245 0.45 +1.1
4,850,433 + BWI76_RS23245 0.63 +0.5
4,850,679 - BWI76_RS23250 0.35 +0.6
4,850,784 - BWI76_RS23250 0.61 -0.2
4,850,953 - +0.8
4,851,173 + BWI76_RS23255 0.41 +0.1
4,851,397 - BWI76_RS23255 0.81 +0.7
4,851,397 - BWI76_RS23255 0.81 +0.8
4,851,399 + BWI76_RS23255 0.81 +0.7
4,851,499 + +0.5
4,851,617 - BWI76_RS23260 0.26 +0.1
4,851,617 - +0.5
4,851,642 - BWI76_RS23260 0.32 -1.5
4,851,803 + BWI76_RS23260 0.66 -0.3
4,851,945 - +0.6
4,852,040 - -0.7

Or see this region's nucleotide sequence