Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20795

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20790 and BWI76_RS20795 are separated by 11 nucleotidesBWI76_RS20795 and BWI76_RS20800 are separated by 114 nucleotidesBWI76_RS20800 and BWI76_RS20805 are separated by 36 nucleotides BWI76_RS20790: BWI76_RS20790 - aldehyde dehydrogenase, at 4,345,900 to 4,347,303 _RS20790 BWI76_RS20795: BWI76_RS20795 - ethanolamine catabolic microcompartment shell protein EutN, at 4,347,315 to 4,347,602 _RS20795 BWI76_RS20800: BWI76_RS20800 - carboxysome shell protein, at 4,347,717 to 4,348,007 _RS20800 BWI76_RS20805: BWI76_RS20805 - phosphate acetyltransferase, at 4,348,044 to 4,349,060 _RS20805 Position (kb) 4347 4348Strain fitness (log2 ratio) -1 0 1at 4346.342 kb on + strand, within BWI76_RS20790at 4346.544 kb on - strand, within BWI76_RS20790at 4346.605 kb on + strand, within BWI76_RS20790at 4346.644 kb on - strand, within BWI76_RS20790at 4347.523 kb on + strand, within BWI76_RS20795at 4347.955 kb on + strand, within BWI76_RS20800at 4347.963 kb on - strand, within BWI76_RS20800at 4347.963 kb on - strand, within BWI76_RS20800at 4348.572 kb on + strand, within BWI76_RS20805at 4348.572 kb on + strand, within BWI76_RS20805at 4348.572 kb on + strand, within BWI76_RS20805

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,346,342 + BWI76_RS20790 0.31 +0.7
4,346,544 - BWI76_RS20790 0.46 +0.1
4,346,605 + BWI76_RS20790 0.50 -0.3
4,346,644 - BWI76_RS20790 0.53 +0.3
4,347,523 + BWI76_RS20795 0.72 +0.5
4,347,955 + BWI76_RS20800 0.82 -0.1
4,347,963 - BWI76_RS20800 0.85 +0.0
4,347,963 - BWI76_RS20800 0.85 -0.5
4,348,572 + BWI76_RS20805 0.52 -0.4
4,348,572 + BWI76_RS20805 0.52 +1.0
4,348,572 + BWI76_RS20805 0.52 +0.2

Or see this region's nucleotide sequence